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[IMP-dev] Minor cleanup to bonds



I cleaned up the bond decorator code. Among other things I removed the length parameter with the expectation that I will add another similar set of decorators for custom connectors (not quite sure what to call them). These will represent arbitrary length attachments between particles. I also added some test code for the bond decorators.
The connectors will have a length and stiffness parameter and will be  
handled all together by a restraint (along the lines of what was  
discussed with the non-bonded list). Normal inter-atomic bonds could  
be handled by generating the appropriate lengths from the names of the  
atoms involved in each atomic bond and adding the connector information.

Attachment: bonds_cleanup
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