IMP  2.4.0
The Integrative Modeling Platform
IMP::atom::ProteinLigandAtomPairScore Member List

This is the complete list of members for IMP::atom::ProteinLigandAtomPairScore, including all inherited members.

Argument typedef (defined in IMP::kernel::PairScore)IMP::kernel::PairScore
clear_caches()IMP::base::Objectvirtual
create_current_decomposition(kernel::Model *m, const kernel::ParticleIndexPair &vt) const IMP::kernel::PairScore
DistancePairScore(const DistanceScore &t0, std::string name="FunctorDistancePairScore %1%") (defined in IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >)IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >
DistanceScore typedef (defined in IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >)IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >
do_create_current_decomposition(kernel::Model *m, const kernel::ParticleIndexPair &vt) const IMP::kernel::PairScoreprotectedvirtual
do_destroy()IMP::base::Objectprotectedvirtual
do_get_inputs(kernel::Model *m, const kernel::ParticleIndexes &pis) constIMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >virtual
evaluate(const kernel::ParticlePair &vt, DerivativeAccumulator *da) const IMP::kernel::PairScorevirtual
evaluate_if_good_index(kernel::Model *m, const kernel::ParticleIndexPair &vt, DerivativeAccumulator *da, double max) const IMP::kernel::PairScorevirtual
evaluate_if_good_indexes(kernel::Model *m, const kernel::ParticleIndexPairs &p, DerivativeAccumulator *da, double max, unsigned int lower_bound, unsigned int upper_bound) constIMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >virtual
evaluate_index(kernel::Model *m, const kernel::ParticleIndexPair &pip, DerivativeAccumulator *da) constIMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >virtual
evaluate_indexes(kernel::Model *m, const kernel::ParticleIndexPairs &p, DerivativeAccumulator *da, unsigned int lower_bound, unsigned int upper_bound) constIMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >virtual
get_check_level() const (defined in IMP::base::Object)IMP::base::Object
get_input_containers(Particle *p) const IMP::kernel::ParticleInputsvirtual
get_input_particles(Particle *p) const IMP::kernel::ParticleInputsvirtual
get_inputs(kernel::Model *m, const ParticleIndexes &pis) const IMP::kernel::ParticleInputs
get_log_level() const (defined in IMP::base::Object)IMP::base::Object
get_maximum_distance() const (defined in IMP::atom::ProteinLigandAtomPairScore)IMP::atom::ProteinLigandAtomPairScore
get_name() const (defined in IMP::base::Object)IMP::base::Object
get_score_functor()IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >
get_type_name() const (defined in IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >)IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >virtual
get_version_info() constIMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >virtual
IndexArgument typedef (defined in IMP::kernel::PairScore)IMP::kernel::PairScore
Modifier typedef (defined in IMP::kernel::PairScore)IMP::kernel::PairScore
NonCopyable() (defined in IMP::base::NonCopyable)IMP::base::NonCopyableprotected
Object(std::string name)IMP::base::Objectprotected
PairScore(std::string name="PairScore %1%") (defined in IMP::kernel::PairScore)IMP::kernel::PairScore
PassArgument typedef (defined in IMP::kernel::PairScore)IMP::kernel::PairScore
PassIndexArgument typedef (defined in IMP::kernel::PairScore)IMP::kernel::PairScore
ProteinLigandAtomPairScore(double threshold=std::numeric_limits< double >::max()) (defined in IMP::atom::ProteinLigandAtomPairScore)IMP::atom::ProteinLigandAtomPairScore
ProteinLigandAtomPairScore(double threshold, base::TextInput data_file) (defined in IMP::atom::ProteinLigandAtomPairScore)IMP::atom::ProteinLigandAtomPairScore
set_check_level(CheckLevel l)IMP::base::Object
set_log_level(LogLevel l)IMP::base::Object
set_name(std::string name) (defined in IMP::base::Object)IMP::base::Object
set_was_used(bool tf) const IMP::base::Object
show(std::ostream &out=std::cout) const (defined in IMP::base::Object)IMP::base::Object
StatisticalPairScore(IntKey k, double threshold, base::TextInput data_file)IMP::core::StatisticalPairScore< ProteinLigandType, true, false >
StatisticalPairScore(IntKey k, double threshold, base::TextInput data_file, unsigned int shift)IMP::core::StatisticalPairScore< ProteinLigandType, true, false >
~DistancePairScore() (defined in IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >)IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >protectedvirtual
~Object() (defined in IMP::base::Object)IMP::base::Objectvirtual
~ParticleInputs() (defined in IMP::kernel::ParticleInputs)IMP::kernel::ParticleInputsprotectedvirtual