secondary_structure_reader.h File Reference

Functions to read PSIPRED/DSSP and encode as SSES. More...

#include "atom_config.h"
#include "Hierarchy.h"
#include "Atom.h"
#include "SecondaryStructureResidue.h"
#include <IMP/base/file.h>

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Namespaces
	IMP
	Synonym for IMP::kernel.
	IMP::atom
	Functionality for loading, creating, manipulating and scoring atomic structures.

PSIPRED reading
Reads in PSIPRED results and decorates particles as SecondaryStructureResidues. Currently assuming order of ps matches file.
SecondaryStructureResidues	IMP::atom::read_psipred (base::TextInput inf, kernel::Model *mdl)
SecondaryStructureResidues	IMP::atom::read_psipred (base::TextInput inf, kernel::Particles ps)

Detailed Description

Functions to read PSIPRED/DSSP and encode as SSES.

Copyright 2007-2014 IMP Inventors. All rights reserved.

Definition in file secondary_structure_reader.h.