kernel/base_types.h File Reference

Basic types used by IMP. More...

#include <IMP/kernel/kernel_config.h>
#include "Key.h"
#include <IMP/base/object_macros.h>
#include <IMP/base/value_macros.h>
#include <IMP/base/Vector.h>
#include <IMP/base/Pointer.h>
#include <IMP/base/WeakPointer.h>
#include <IMP/base/types.h>
#include <IMP/base/Array.h>
#include <IMP/base/Index.h>

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Namespaces
	IMP
	Synonym for IMP::kernel.
	IMP::kernel
	Base functionality and abstract base classes for representation, scoring and sampling.

Typedefs
typedef IMP::base::Vector < IMP::base::Pointer < Container > >	IMP::kernel::Containers
typedef IMP::base::Vector < IMP::base::WeakPointer < Container > >	IMP::kernel::ContainersTemp
typedef IMP::base::Vector < IMP::base::Pointer < kernel::ModelObject > >	IMP::kernel::ModelObjects
typedef IMP::base::Vector < IMP::base::WeakPointer < kernel::ModelObject > >	IMP::kernel::ModelObjectsTemp
typedef base::Vector < ModelObjectsTemp >	IMP::kernel::ModelObjectsTemps
typedef IMP::base::Vector < IMP::base::Pointer < kernel::Model > >	IMP::kernel::Models
typedef IMP::base::Vector < IMP::base::WeakPointer < kernel::Model > >	IMP::kernel::ModelsTemp
typedef IMP::base::Vector < IMP::base::Pointer < OptimizerState > >	IMP::kernel::OptimizerStates
typedef IMP::base::Vector < IMP::base::WeakPointer < OptimizerState > >	IMP::kernel::OptimizerStatesTemp
typedef IMP::base::Vector < IMP::base::Pointer < PairContainer > >	IMP::kernel::PairContainers
typedef IMP::base::Vector < IMP::base::WeakPointer < PairContainer > >	IMP::kernel::PairContainersTemp
typedef IMP::base::Vector < IMP::base::Pointer < PairModifier > >	IMP::kernel::PairModifiers
typedef IMP::base::Vector < IMP::base::WeakPointer < PairModifier > >	IMP::kernel::PairModifiersTemp
typedef IMP::base::Vector < IMP::base::Pointer < PairPredicate > >	IMP::kernel::PairPredicates
typedef IMP::base::Vector < IMP::base::WeakPointer < PairPredicate > >	IMP::kernel::PairPredicatesTemp
typedef IMP::base::Vector < IMP::base::Pointer < PairScore > >	IMP::kernel::PairScores
typedef IMP::base::Vector < IMP::base::WeakPointer < PairScore > >	IMP::kernel::PairScoresTemp
typedef base::Index < ParticleIndexTag >	IMP::kernel::ParticleIndex
typedef base::Vector < ParticleIndex >	IMP::kernel::ParticleIndexes
typedef base::Array < 2, ParticleIndex >	IMP::kernel::ParticleIndexPair
typedef IMP::base::Vector < ParticleIndexPair >	IMP::kernel::ParticleIndexPairs
typedef base::Array < 4, ParticleIndex >	IMP::kernel::ParticleIndexQuad
typedef IMP::base::Vector < ParticleIndexQuad >	IMP::kernel::ParticleIndexQuads
typedef base::Array < 3, ParticleIndex >	IMP::kernel::ParticleIndexTriplet
typedef IMP::base::Vector < ParticleIndexTriplet >	IMP::kernel::ParticleIndexTriplets
typedef base::Array < 2, base::WeakPointer < Particle >, Particle * >	IMP::kernel::ParticlePair
typedef IMP::base::Vector < ParticlePair >	IMP::kernel::ParticlePairsTemp
typedef base::Array < 4, base::WeakPointer < Particle >, Particle * >	IMP::kernel::ParticleQuad
typedef IMP::base::Vector < ParticleQuad >	IMP::kernel::ParticleQuadsTemp
typedef base::Vector < base::Pointer< Particle > >	IMP::kernel::Particles
typedef base::Vector < base::WeakPointer< Particle > >	IMP::kernel::ParticlesTemp
typedef base::Vector < ParticlesTemp >	IMP::kernel::ParticlesTemps
typedef base::Array < 3, base::WeakPointer < Particle >, Particle * >	IMP::kernel::ParticleTriplet
typedef IMP::base::Vector < ParticleTriplet >	IMP::kernel::ParticleTripletsTemp
typedef IMP::base::Vector < IMP::base::Pointer < QuadContainer > >	IMP::kernel::QuadContainers
typedef IMP::base::Vector < IMP::base::WeakPointer < QuadContainer > >	IMP::kernel::QuadContainersTemp
typedef IMP::base::Vector < IMP::base::Pointer < QuadModifier > >	IMP::kernel::QuadModifiers
typedef IMP::base::Vector < IMP::base::WeakPointer < QuadModifier > >	IMP::kernel::QuadModifiersTemp
typedef IMP::base::Vector < IMP::base::Pointer < QuadPredicate > >	IMP::kernel::QuadPredicates
typedef IMP::base::Vector < IMP::base::WeakPointer < QuadPredicate > >	IMP::kernel::QuadPredicatesTemp
typedef IMP::base::Vector < IMP::base::Pointer < QuadScore > >	IMP::kernel::QuadScores
typedef IMP::base::Vector < IMP::base::WeakPointer < QuadScore > >	IMP::kernel::QuadScoresTemp
typedef IMP::base::Vector < IMP::base::Pointer < Restraint > >	IMP::kernel::Restraints
typedef IMP::base::Vector < IMP::base::Pointer < RestraintSet > >	IMP::kernel::RestraintSets
typedef IMP::base::Vector < IMP::base::WeakPointer < RestraintSet > >	IMP::kernel::RestraintSetsTemp
typedef IMP::base::Vector < IMP::base::WeakPointer < Restraint > >	IMP::kernel::RestraintsTemp
typedef IMP::base::Vector < IMP::base::Pointer < ScoreState > >	IMP::kernel::ScoreStates
typedef IMP::base::Vector < IMP::base::WeakPointer < ScoreState > >	IMP::kernel::ScoreStatesTemp
typedef IMP::base::Vector < IMP::base::Pointer < ScoringFunction > >	IMP::kernel::ScoringFunctions
typedef IMP::base::Vector < IMP::base::WeakPointer < ScoringFunction > >	IMP::kernel::ScoringFunctionsTemp
typedef IMP::base::Vector < IMP::base::Pointer < SingletonContainer > >	IMP::kernel::SingletonContainers
typedef IMP::base::Vector < IMP::base::WeakPointer < SingletonContainer > >	IMP::kernel::SingletonContainersTemp
typedef IMP::base::Vector < IMP::base::Pointer < SingletonModifier > >	IMP::kernel::SingletonModifiers
typedef IMP::base::Vector < IMP::base::WeakPointer < SingletonModifier > >	IMP::kernel::SingletonModifiersTemp
typedef IMP::base::Vector < IMP::base::Pointer < SingletonPredicate > >	IMP::kernel::SingletonPredicates
typedef IMP::base::Vector < IMP::base::WeakPointer < SingletonPredicate > >	IMP::kernel::SingletonPredicatesTemp
typedef IMP::base::Vector < IMP::base::Pointer < SingletonScore > >	IMP::kernel::SingletonScores
typedef IMP::base::Vector < IMP::base::WeakPointer < SingletonScore > >	IMP::kernel::SingletonScoresTemp
typedef IMP::base::Vector < IMP::base::Pointer < TripletContainer > >	IMP::kernel::TripletContainers
typedef IMP::base::Vector < IMP::base::WeakPointer < TripletContainer > >	IMP::kernel::TripletContainersTemp
typedef IMP::base::Vector < IMP::base::Pointer < TripletModifier > >	IMP::kernel::TripletModifiers
typedef IMP::base::Vector < IMP::base::WeakPointer < TripletModifier > >	IMP::kernel::TripletModifiersTemp
typedef IMP::base::Vector < IMP::base::Pointer < TripletPredicate > >	IMP::kernel::TripletPredicates
typedef IMP::base::Vector < IMP::base::WeakPointer < TripletPredicate > >	IMP::kernel::TripletPredicatesTemp
typedef IMP::base::Vector < IMP::base::Pointer < TripletScore > >	IMP::kernel::TripletScores
typedef IMP::base::Vector < IMP::base::WeakPointer < TripletScore > >	IMP::kernel::TripletScoresTemp

Attribute Keys
Each type of attribute has an associated type of key. The keys can be constructed from a string. Such construction can be expensive and so the resulting keys should be cached.
typedef Key< 0, true >	IMP::kernel::FloatKey
	The type used to identify float attributes in the Particles. More...
typedef IMP::base::Vector < FloatKey >	IMP::kernel::FloatKeys
typedef Key< 1, true >	IMP::kernel::IntKey
	The type used to identify int attributes in the Particles. More...
typedef IMP::base::Vector< IntKey >	IMP::kernel::IntKeys
typedef Key< 2, true >	IMP::kernel::StringKey
	The type used to identify string attributes in the Particles. More...
typedef IMP::base::Vector < StringKey >	IMP::kernel::StringKeys
typedef Key< 3, true >	IMP::kernel::ParticleIndexKey
	The type used to identify a particle attribute in the Particles. More...
typedef IMP::base::Vector < ParticleIndexKey >	IMP::kernel::ParticleIndexKeys
typedef Key< 4, true >	IMP::kernel::ObjectKey
	The type used to identify an Object attribute. More...
typedef IMP::base::Vector < ObjectKey >	IMP::kernel::ObjectKeys
typedef Key< 9, true >	IMP::kernel::WeakObjectKey
	The type used to identify a non-ref counted Object attribute. More...
typedef IMP::base::Vector < WeakObjectKey >	IMP::kernel::WeakObjectKeys
typedef Key< 5, true >	IMP::kernel::IntsKey
	The type used to identify int attributes in the Particles. More...
typedef IMP::base::Vector < IntsKey >	IMP::kernel::IntsKeys
typedef Key< 6, true >	IMP::kernel::ParticleIndexesKey
	The type used to identify a particle attribute in the Particles. More...
typedef IMP::base::Vector < ParticleIndexesKey >	IMP::kernel::ParticleIndexesKeys
typedef Key< 7, true >	IMP::kernel::ObjectsKey
	The type used to identify a particle attribute in the Particles. More...
typedef IMP::base::Vector < ObjectsKey >	IMP::kernel::ObjectsKeys
typedef Key< 8, true >	IMP::kernel::ModelKey
	The type used to identify data stored directly in the model. More...
typedef IMP::base::Vector < kernel::ModelKey >	IMP::kernel::ModelKeys

Detailed Description

Basic types used by IMP.

Copyright 2007-2014 IMP Inventors. All rights reserved.

Definition in file kernel/base_types.h.