IMP.em_tools

Table of Contents

• estimate_threshold_from_molecular_mass
• map2pca
• mol2pca
• resample_density
• simulate_density_from_pdb
• view_density_header

EM Tools

We provide a number of command line tools to handle electron microscopy density maps and associated files:

estimate_threshold_from_molecular_mass

Estimate EM density threshold.

map2pca

Write out density map principal components in cmm format.

mol2pca

Write out protein principal components in cmm format.

resample_density

Resample a density map.

simulate_density_from_pdb

Samples a protein into a simulated 3D density map.

view_density_header

Display the header information for a density map.

Info

Author(s): Keren Lasker

Maintainer: benmwebb

License: LGPL This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

Publications:

• See main IMP papers list.