hierarchical_clustering.h File Reference

Agglomerative clustering algorithm. More...

#include "IMP/em2d/em2d_config.h"
#include "IMP/em2d/scores2D.h"
#include "IMP/base_types.h"
#include <IMP/base/log.h>
#include <vector>
#include <list>
#include <algorithm>
#include <limits>
#include <functional>

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Classes
class	IMP::em2d::AverageDistanceLinkage
	Functor for hierarchical clustering based on average-linkage. More...
class	IMP::em2d::ClusterSet
	A class to store the clusters generated during hierarchical clustering. More...
class	IMP::em2d::CompleteLinkage
	Functor for hierarchical clustering based on complete linkage. More...
class	IMP::em2d::SingleLinkage
	Functor for hierarchical clustering based on single linkage. More...

Namespaces
	IMP
	Synonym for IMP::kernel.
	IMP::em2d
	Restraints using electron microscopy 2D images (class averages).

Typedefs
typedef IMP::base::Vector < AverageDistanceLinkage >	IMP::em2d::AverageDistanceLinkages
typedef IMP::base::Vector < ClusterSet >	IMP::em2d::ClusterSets
typedef IMP::base::Vector < CompleteLinkage >	IMP::em2d::CompleteLinkages
typedef std::list < pair_cluster_id_distance >	IMP::em2d::list_cluster_id_distance
typedef std::pair< unsigned int, double >	IMP::em2d::pair_cluster_id_distance
typedef IMP::base::Vector < SingleLinkage >	IMP::em2d::SingleLinkages
typedef FloatsList	IMP::em2d::VectorOfFloats
typedef IntsList	IMP::em2d::VectorOfInts

Functions
template<class LinkageFunction >
ClusterSet	IMP::em2d::do_hierarchical_agglomerative_clustering (const FloatsList &distances)
	Function to perform agglomerative clustering. More...
template<class T >
void	IMP::em2d::print_vector (const std::vector< T > &v)

Detailed Description

Agglomerative clustering algorithm.

Copyright 2007-2014 IMP Inventors. All rights reserved.

Definition in file hierarchical_clustering.h.