IMP.em2d.restraints Namespace Reference

Utility functions to handle restraints. More...

Detailed Description

Utility functions to handle restraints.

Functions
def	get_connectivity_restraint
	Set a connectivity restraint for the leaves of a set of particles. More...
def	get_em2d_restraint
	Sets a restraint for comparing the model to a set of EM images. More...

Function Documentation

def IMP.em2d.restraints.get_connectivity_restraint	(		particles,
			distance = 10.0,
			n_pairs = 1,
			spring_constant = 1
	)

Set a connectivity restraint for the leaves of a set of particles.

The intended use is that the each particle is a hierarchy. Each hierarchy contains leaves that are atoms, or particles that are a coarse representation of a molecule

Definition at line 20 of file restraints.py.

def IMP.em2d.restraints.get_em2d_restraint	(		assembly,
			images_selection_file,
			restraint_params,
			mode = 'fast',
			n_optimized = 1
	)

Sets a restraint for comparing the model to a set of EM images.

Definition at line 39 of file restraints.py.