IMP::isd::HybridMonteCarlo Member List

This is the complete list of members for IMP::isd::HybridMonteCarlo, including all inherited members.

add_mover(MonteCarloMover *obj) (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
add_movers(const MonteCarloMovers &objs) (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
add_optimizer_state(OptimizerState *obj) (defined in IMP::kernel::Optimizer)	IMP::kernel::Optimizer
add_optimizer_states(const OptimizerStates &objs) (defined in IMP::kernel::Optimizer)	IMP::kernel::Optimizer
clear_caches()	IMP::base::Object	virtual
clear_movers() (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
clear_optimizer_states() (defined in IMP::kernel::Optimizer)	IMP::kernel::Optimizer
do_accept_or_reject_move(double score, double last, double proposal_ratio)	IMP::core::MonteCarlo	protected
do_accept_or_reject_move(double score, double proposal_ratio) (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo	protected
do_destroy()	IMP::base::Object	protectedvirtual
do_evaluate(const kernel::ParticleIndexes &) const	IMP::isd::HybridMonteCarlo	virtual
do_get_inputs() const	IMP::kernel::Optimizer	protectedvirtual
do_get_interactions() const	IMP::kernel::ModelObject	protectedvirtual
do_get_outputs() const	IMP::kernel::Optimizer	protectedvirtual
do_move() (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo	protected
do_optimize(unsigned int max_steps)	IMP::core::MonteCarlo	protectedvirtual
do_step()	IMP::isd::HybridMonteCarlo	virtual
get_best_accepted_energy() const	IMP::core::MonteCarlo
get_check_level() const (defined in IMP::base::Object)	IMP::base::Object
get_has_dependencies() const	IMP::kernel::ModelObject
get_has_movers() (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
get_has_optimizer_states() (defined in IMP::kernel::Optimizer)	IMP::kernel::Optimizer
get_has_required_score_states() const	IMP::kernel::ModelObject
get_incremental_scoring_function() const (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
get_inputs() const	IMP::kernel::ModelObject
get_interactions() const	IMP::kernel::ModelObject
get_kinetic_energy() const (defined in IMP::isd::HybridMonteCarlo)	IMP::isd::HybridMonteCarlo
get_kt() const (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
get_last_accepted_energy() const	IMP::core::MonteCarlo
get_last_score() const	IMP::kernel::Optimizer
get_log_level() const (defined in IMP::base::Object)	IMP::base::Object
get_maximum_difference() const (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
get_md() const (defined in IMP::isd::HybridMonteCarlo)	IMP::isd::HybridMonteCarlo
get_model() const (defined in IMP::kernel::ModelObject)	IMP::kernel::ModelObject
get_movable_particles() const	IMP::core::MonteCarlo	protected
get_mover(unsigned int i) const (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
get_movers() const (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
get_name() const (defined in IMP::base::Object)	IMP::base::Object
get_number_of_accepted_steps() const	IMP::core::MonteCarlo
get_number_of_downward_steps() const	IMP::core::MonteCarlo
get_number_of_forward_steps() const	IMP::core::MonteCarlo
get_number_of_md_steps() const (defined in IMP::isd::HybridMonteCarlo)	IMP::isd::HybridMonteCarlo
get_number_of_movers() const (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
get_number_of_optimizer_states() const (defined in IMP::kernel::Optimizer)	IMP::kernel::Optimizer
get_number_of_proposed_steps() const	IMP::core::MonteCarlo
get_number_of_upward_steps() const	IMP::core::MonteCarlo
get_optimizer_state(unsigned int i) const (defined in IMP::kernel::Optimizer)	IMP::kernel::Optimizer
get_optimizer_state_inputs() const (defined in IMP::kernel::Optimizer)	IMP::kernel::Optimizer	protected
get_optimizer_states() const (defined in IMP::kernel::Optimizer)	IMP::kernel::Optimizer
get_outputs() const	IMP::kernel::ModelObject
get_persistence() const (defined in IMP::isd::HybridMonteCarlo)	IMP::isd::HybridMonteCarlo
get_potential_energy() const (defined in IMP::isd::HybridMonteCarlo)	IMP::isd::HybridMonteCarlo
get_required_score_states() const	IMP::kernel::ModelObject
get_score_threshold() const	IMP::core::MonteCarlo
get_scoring_function() const	IMP::kernel::Optimizer
get_stop_on_good_score() const (defined in IMP::kernel::Optimizer)	IMP::kernel::Optimizer
get_timestep() const (defined in IMP::isd::HybridMonteCarlo)	IMP::isd::HybridMonteCarlo
get_total_energy() const (defined in IMP::isd::HybridMonteCarlo)	IMP::isd::HybridMonteCarlo
get_type_name() const (defined in IMP::isd::HybridMonteCarlo)	IMP::isd::HybridMonteCarlo	virtual
get_use_incremental_scoring_function() const (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
get_version_info() const	IMP::isd::HybridMonteCarlo	virtual
handle_set_has_required_score_states(bool)	IMP::kernel::ModelObject	protectedvirtual
HybridMonteCarlo(kernel::Model *m, Float kT=1.0, unsigned steps=100, Float timestep=1.0, unsigned persistence=1) (defined in IMP::isd::HybridMonteCarlo)	IMP::isd::HybridMonteCarlo
ModelObject(kernel::Model *m, std::string name) (defined in IMP::kernel::ModelObject)	IMP::kernel::ModelObject
MonteCarlo(kernel::Model *m) (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
NonCopyable() (defined in IMP::base::NonCopyable)	IMP::base::NonCopyable	protected
Object(std::string name)	IMP::base::Object	protected
optimize(unsigned int max_steps)	IMP::kernel::Optimizer
Optimizer(kernel::Model *m, std::string name="Optimizer %1%") (defined in IMP::kernel::Optimizer)	IMP::kernel::Optimizer
remove_mover(MonteCarloMover *d) (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
remove_movers(const MonteCarloMovers &d) (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
remove_optimizer_state(OptimizerState *d) (defined in IMP::kernel::Optimizer)	IMP::kernel::Optimizer
remove_optimizer_states(const OptimizerStates &d) (defined in IMP::kernel::Optimizer)	IMP::kernel::Optimizer
reserve_movers(unsigned int sz) (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
reserve_optimizer_states(unsigned int sz) (defined in IMP::kernel::Optimizer)	IMP::kernel::Optimizer
reset_statistics() (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
set_check_level(CheckLevel l)	IMP::base::Object
set_has_dependencies(bool tf)	IMP::kernel::ModelObject
set_has_required_score_states(bool tf)	IMP::kernel::ModelObject
set_incremental_scoring_function(IncrementalScoringFunction *isf)	IMP::core::MonteCarlo
set_kt(Float t) (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
set_log_level(LogLevel l)	IMP::base::Object
set_maximum_difference(double d)	IMP::core::MonteCarlo
set_movers(const MonteCarloMovers &ps) (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
set_movers_order(const MonteCarloMovers &objs) (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo
set_name(std::string name) (defined in IMP::base::Object)	IMP::base::Object
set_number_of_md_steps(unsigned nsteps) (defined in IMP::isd::HybridMonteCarlo)	IMP::isd::HybridMonteCarlo
set_optimizer_states(const OptimizerStates &ps) (defined in IMP::kernel::Optimizer)	IMP::kernel::Optimizer
set_optimizer_states_order(const OptimizerStates &objs) (defined in IMP::kernel::Optimizer)	IMP::kernel::Optimizer
set_persistence(unsigned persistence=1) (defined in IMP::isd::HybridMonteCarlo)	IMP::isd::HybridMonteCarlo
set_return_best(bool tf)	IMP::core::MonteCarlo
set_score_threshold(double s)	IMP::core::MonteCarlo
set_scoring_function(ScoringFunctionAdaptor sf)	IMP::kernel::Optimizer	virtual
set_stop_on_good_score(bool tf)	IMP::kernel::Optimizer
set_timestep(Float ts) (defined in IMP::isd::HybridMonteCarlo)	IMP::isd::HybridMonteCarlo
set_was_used(bool tf) const	IMP::base::Object
show(std::ostream &out=std::cout) const (defined in IMP::base::Object)	IMP::base::Object
update_states() const	IMP::kernel::Optimizer	protected
~HybridMonteCarlo() (defined in IMP::isd::HybridMonteCarlo)	IMP::isd::HybridMonteCarlo	protectedvirtual
~ModelObject() (defined in IMP::kernel::ModelObject)	IMP::kernel::ModelObject
~MonteCarlo() (defined in IMP::core::MonteCarlo)	IMP::core::MonteCarlo	protectedvirtual
~Object() (defined in IMP::base::Object)	IMP::base::Object	virtual