| add_pair_filter(PairPredicate *obj) (defined in IMP::core::ClosePairsFinder) | IMP::core::ClosePairsFinder | |
| add_pair_filters(const PairPredicates &objs) (defined in IMP::core::ClosePairsFinder) | IMP::core::ClosePairsFinder | |
| clear_caches() | IMP::base::Object | virtual |
| clear_pair_filters() (defined in IMP::core::ClosePairsFinder) | IMP::core::ClosePairsFinder | |
| ClosePairsFinder(std::string name) (defined in IMP::core::ClosePairsFinder) | IMP::core::ClosePairsFinder | |
| do_destroy() | IMP::base::Object | protectedvirtual |
| do_get_inputs(kernel::Model *m, const kernel::ParticleIndexes &pis) const | IMP::core::QuadraticClosePairsFinder | virtual |
| get_are_close(kernel::Particle *a, kernel::Particle *b) const (defined in IMP::core::QuadraticClosePairsFinder) | IMP::core::QuadraticClosePairsFinder | |
| get_are_close(kernel::Model *m, kernel::ParticleIndex a, kernel::ParticleIndex b) const (defined in IMP::core::QuadraticClosePairsFinder) | IMP::core::QuadraticClosePairsFinder | |
| get_check_level() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_close_pairs(const algebra::BoundingBox3Ds &bbs) const (defined in IMP::core::QuadraticClosePairsFinder) | IMP::core::QuadraticClosePairsFinder | virtual |
| get_close_pairs(const algebra::BoundingBox3Ds &bas, const algebra::BoundingBox3Ds &bbs) const (defined in IMP::core::QuadraticClosePairsFinder) | IMP::core::QuadraticClosePairsFinder | virtual |
| get_close_pairs(kernel::Model *m, const kernel::ParticleIndexes &pc) const (defined in IMP::core::QuadraticClosePairsFinder) | IMP::core::QuadraticClosePairsFinder | virtual |
| get_close_pairs(kernel::Model *m, const kernel::ParticleIndexes &pca, const kernel::ParticleIndexes &pcb) const (defined in IMP::core::QuadraticClosePairsFinder) | IMP::core::QuadraticClosePairsFinder | virtual |
| IMP::core::ClosePairsFinder::get_close_pairs(const kernel::ParticlesTemp &pc) const | IMP::core::ClosePairsFinder | |
| IMP::core::ClosePairsFinder::get_close_pairs(const kernel::ParticlesTemp &pca, const kernel::ParticlesTemp &pcb) const | IMP::core::ClosePairsFinder | |
| get_distance() const (defined in IMP::core::ClosePairsFinder) | IMP::core::ClosePairsFinder | |
| get_has_pair_filters() (defined in IMP::core::ClosePairsFinder) | IMP::core::ClosePairsFinder | |
| get_input_containers(Particle *p) const | IMP::kernel::ParticleInputs | virtual |
| get_input_particles(Particle *p) const | IMP::kernel::ParticleInputs | virtual |
| get_inputs(kernel::Model *m, const ParticleIndexes &pis) const | IMP::kernel::ParticleInputs | |
| get_log_level() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_name() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_number_of_pair_filters() const (defined in IMP::core::ClosePairsFinder) | IMP::core::ClosePairsFinder | |
| get_pair_filter(unsigned int i) const (defined in IMP::core::ClosePairsFinder) | IMP::core::ClosePairsFinder | |
| get_pair_filters() const (defined in IMP::core::ClosePairsFinder) | IMP::core::ClosePairsFinder | |
| get_type_name() const (defined in IMP::core::QuadraticClosePairsFinder) | IMP::core::QuadraticClosePairsFinder | virtual |
| get_version_info() const | IMP::core::QuadraticClosePairsFinder | virtual |
| NonCopyable() (defined in IMP::base::NonCopyable) | IMP::base::NonCopyable | protected |
| Object(std::string name) | IMP::base::Object | protected |
| QuadraticClosePairsFinder() (defined in IMP::core::QuadraticClosePairsFinder) | IMP::core::QuadraticClosePairsFinder | |
| remove_pair_filter(PairPredicate *d) (defined in IMP::core::ClosePairsFinder) | IMP::core::ClosePairsFinder | |
| remove_pair_filters(const PairPredicates &d) (defined in IMP::core::ClosePairsFinder) | IMP::core::ClosePairsFinder | |
| reserve_pair_filters(unsigned int sz) (defined in IMP::core::ClosePairsFinder) | IMP::core::ClosePairsFinder | |
| set_check_level(CheckLevel l) | IMP::base::Object | |
| set_distance(double d) (defined in IMP::core::ClosePairsFinder) | IMP::core::ClosePairsFinder | virtual |
| set_log_level(LogLevel l) | IMP::base::Object | |
| set_name(std::string name) (defined in IMP::base::Object) | IMP::base::Object | |
| set_pair_filters(const PairPredicates &ps) (defined in IMP::core::ClosePairsFinder) | IMP::core::ClosePairsFinder | |
| set_pair_filters_order(const PairPredicates &objs) (defined in IMP::core::ClosePairsFinder) | IMP::core::ClosePairsFinder | |
| set_was_used(bool tf) const | IMP::base::Object | |
| show(std::ostream &out=std::cout) const (defined in IMP::base::Object) | IMP::base::Object | |
| ~ClosePairsFinder() (defined in IMP::core::ClosePairsFinder) | IMP::core::ClosePairsFinder | |
| ~Object() (defined in IMP::base::Object) | IMP::base::Object | virtual |
| ~ParticleInputs() (defined in IMP::kernel::ParticleInputs) | IMP::kernel::ParticleInputs | protectedvirtual |
| ~QuadraticClosePairsFinder() (defined in IMP::core::QuadraticClosePairsFinder) | IMP::core::QuadraticClosePairsFinder | protectedvirtual |
