IMP  2.2.1
The Integrative Modeling Platform
em.h
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1 /**
2  * \file IMP/em.h
3  * \brief A container which has pairs which ensure a set is connected
4  *
5  * Copyright 2007-2014 IMP Inventors. All rights reserved.
6  */
7 
8 #ifndef IMP_EM_H
9 #define IMP_EM_H
10 #include <IMP/em/CoarseCC.h>
11 #include <IMP/em/CoarseCCatIntervals.h>
12 #include <IMP/em/CoarseConvolution.h>
13 #include <IMP/em/DensityFillingRestraint.h>
14 #include <IMP/em/DensityHeader.h>
15 #include <IMP/em/DensityMap.h>
16 #include <IMP/em/EMReaderWriter.h>
17 #include <IMP/em/EnvelopeFitRestraint.h>
18 #include <IMP/em/EnvelopePenetrationRestraint.h>
19 #include <IMP/em/EnvelopeScore.h>
20 #include <IMP/em/FitRestraint.h>
21 #include <IMP/em/ImageHeader.h>
22 #include <IMP/em/KernelParameters.h>
23 #include <IMP/em/MRCReaderWriter.h>
24 #include <IMP/em/MapDistanceTransform.h>
25 #include <IMP/em/MapReaderWriter.h>
26 #include <IMP/em/PCAAligner.h>
27 #include <IMP/em/PCAFitRestraint.h>
28 #include <IMP/em/SampledDensityMap.h>
29 #include <IMP/em/SpiderHeader.h>
30 #include <IMP/em/SpiderReaderWriter.h>
31 #include <IMP/em/SurfaceShellDensityMap.h>
32 #include <IMP/em/Voxel.h>
33 #include <IMP/em/XplorReaderWriter.h>
34 #include <IMP/em/converters.h>
35 #include <IMP/em/def.h>
36 #include <IMP/em/density_map_volumetrics.h>
37 #include <IMP/em/density_utilities.h>
38 #include <IMP/em/embedding.h>
39 #include <IMP/em/envelope_penetration.h>
40 #include <IMP/em/exp.h>
41 #include <IMP/em/header_converters.h>
42 #include <IMP/em/masking.h>
43 #include <IMP/em/rigid_fitting.h>
44 #endif /* IMP_EM_H */
DensityFillingRestraint.h
Score how well the particles fill the density.
PCAAligner.h
Copyright 2007-2014 IMP Inventors. All rights reserved.
PCAFitRestraint.h
Calculate match between density map PCA and particles PCA.
FitRestraint.h
Calculate score based on fit to EM map.
header_converters.h
Functions to convert between ImageHeader and DensityHeader Copyright 2007-2014 IMP Inventors...
CoarseCC.h
Perform coarse fitting between two density objects.
density_map_volumetrics.h
Classes and functions to handle volumetric properties in Density maps.
def.h
Definitions for EMBED.
density_utilities.h
density map manipulations
embedding.h
Cluster sets of points.
DensityHeader.h
Metadata for a density file.
masking.h
masking tools
KernelParameters.h
Calculates and stores gaussian kernel parameters.
SurfaceShellDensityMap.h
Represent a molecule as shells of distance from the surface.
CoarseCCatIntervals.h
Cross correlation coefficient calculator.
exp.h
An approximation of the exponential function.
converters.h
Converters of density values.
DensityMap.h
Class for handling density maps.
MapReaderWriter.h
An abstract class for reading a map.
envelope_penetration.h
functions for calculation envelope penetration
Voxel.h
voxel decorator.
EnvelopePenetrationRestraint.h
Score how well a protein is inside its density.
SpiderHeader.h
Header for Spider and Xmipp formats.
MRCReaderWriter.h
Classes to read or write MRC files.
XplorReaderWriter.h
Classes to read or write density files in XPLOR format.
EnvelopeFitRestraint.h
score envelope fit based on map distance transform
CoarseConvolution.h
Convolutes two grids.
EnvelopeScore.h
class for envelope based scoring using MapDistanceTransform
SpiderReaderWriter.h
Management of Spider Headers Electron Microscopy. Compatible with Spider and Xmipp formats Copyright ...
ImageHeader.h
Header for EM images. Compatible with Spider and Xmipp formats Copyright 2007-2014 IMP Inventors...
MapDistanceTransform.h
class for computing a distance transform of the density map
SampledDensityMap.h
Sampled density map.
EMReaderWriter.h
Classes to read or write density files in EM format.
rigid_fitting.h
preforms rigid fitting between a set of particles and a density map