IMP  2.2.1
The Integrative Modeling Platform
IMP::multifit::ProteomicsEMAlignmentAtomic Member List

This is the complete list of members for IMP::multifit::ProteomicsEMAlignmentAtomic, including all inherited members.

add_all_restraints() (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomic
add_states_and_filters() (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomic
align() (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomic
all_rs_filt_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
asmb_data_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
cg_sorted_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
clear_caches()IMP::base::Objectvirtual
conn_rs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
conn_rs_with_filter_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
dmap_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
do_destroy()IMP::base::Objectvirtual
dummy_rs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
em_rs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
ev_rs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
ev_thr_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
fast_scoring_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
filters_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
filters_set_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
fit_state_key_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
get_alignment_restraints() const (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
get_check_level() const (defined in IMP::base::Object)IMP::base::Object
get_combinations(bool uniques=false) const (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomic
get_log_level() const (defined in IMP::base::Object)IMP::base::Object
get_model() (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomic
get_molecules() const (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomic
get_name() const (defined in IMP::base::Object)IMP::base::Object
get_rigid_bodies() const (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomic
get_type_name() const (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicvirtual
get_version_info() const IMP::multifit::ProteomicsEMAlignmentAtomicvirtual
jt_rs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
load_atomic_molecules() (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
load_combination_of_states(const Ints &state4particles)IMP::multifit::ProteomicsEMAlignmentAtomic
mapping_data_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
mdl_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
mhs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
NonCopyable() (defined in IMP::base::NonCopyable)IMP::base::NonCopyableprotected
Object(std::string name)IMP::base::Objectprotected
order_key_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
params_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
post_sampling_ev_pairs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
prot_data_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
ProteomicsEMAlignmentAtomic(const ProteinsAnchorsSamplingSpace &mapping_data, multifit::SettingsData *asmb_data, const AlignmentParams &align_param) (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomic
pst_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
rbs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
rc_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
restraints_set_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
sampled_assignments_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
sampled_solutions_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
set_check_level(CheckLevel l)IMP::base::Object
set_density_map(em::DensityMap *dmap, float threshold) (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomic
set_fast_scoring(bool state)IMP::multifit::ProteomicsEMAlignmentAtomic
set_log_level(LogLevel l)IMP::base::Object
set_name(std::string name) (defined in IMP::base::Object)IMP::base::Object
set_particle_states_table(domino::SubsetFilterTables &filters) (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
set_was_used(bool tf) const IMP::base::Object
show(std::ostream &out=std::cout) const (defined in IMP::base::Object)IMP::base::Object
show_domino_merge_tree() const (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomic
show_scores_header(std::ostream &ous=std::cout) const (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomic
states_set_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
threshold_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
xlink_rs_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
xlink_rs_with_filter_ (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotected
~Object() (defined in IMP::base::Object)IMP::base::Objectvirtual
~ProteomicsEMAlignmentAtomic() (defined in IMP::multifit::ProteomicsEMAlignmentAtomic)IMP::multifit::ProteomicsEMAlignmentAtomicprotectedvirtual