| asmb_norm_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| best_fits_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| best_trans_per_rot_log_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| cen_trans_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| clear_caches() | IMP::base::Object | virtual |
| copy_density_data(em::DensityMap *dmap, double *data_array) (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| copy_mol_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| corr_mode_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| crop_margin(em::DensityMap *in_map) (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| detect_top_fits(const internal::RotScoresVec &rot_scores, bool cluster_fits, double max_translation, double max_clustering_trans, double max_clustering_rotation) | IMP::multifit::FFTFitting | protected |
| do_destroy() | IMP::base::Object | virtual |
| do_global_fitting(em::DensityMap *dmap, double density_threshold, atom::Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=true, int num_angle_per_voxel=1, const std::string &angles_filename="") | IMP::multifit::FFTFitting | |
| do_local_fitting(em::DensityMap *dmap, double density_threshold, atom::Hierarchy mol2fit, double angle_sampling_interval_rad, double max_angle_sampling_rad, double max_translation, int num_fits_to_report, bool cluster_fits, int num_angle_per_voxel, double max_clustering_translation, double max_clustering_rotation, const std::string &angles_filename="") | IMP::multifit::FFTFitting | |
| fft_scores_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| fft_scores_flipped_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| FFTFitting() (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | |
| fftw_grid_hi_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| fftw_grid_lo_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| fftw_nvox_c2r_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| fftw_nvox_r2c_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| fftw_pad_factor_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| fftw_plan_forward_hi_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| fftw_plan_forward_lo_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| fftw_plan_reverse_hi_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| fftw_r_grid_mol_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| fftw_scale_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| fftw_translational_search(const multifit::internal::EulerAngles &rot, int i) (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| fftw_zero_padding_extent_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| filtered_kernel_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| filtered_kernel_ext_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| fits_hash_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| gauss_kernel_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| gauss_kernel_ext_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| gauss_kernel_nvox_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| get_check_level() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_log_level() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_name() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_type_name() const (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | virtual |
| get_unwrapped_index(int wx, int wy, int wz, int &ix, int &iy, int &iz) (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| get_version_info() const | IMP::multifit::FFTFitting | virtual |
| high_mol_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| inside_num_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| inside_num_flipped_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| kernel_filter_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| kernel_filter_ext_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| low_cutoff_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| low_map_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| low_map_data_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| map_cen_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| margin_ignored_in_conv_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| NonCopyable() (defined in IMP::base::NonCopyable) | IMP::base::NonCopyable | protected |
| num_angle_per_voxel_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| num_fits_reported_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| nvox_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| nx_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| nx_half_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| ny_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| ny_half_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| nz_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| nz_half_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| Object(std::string name) | IMP::base::Object | protected |
| orig_cen_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| orig_mol_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| orig_mol_copy_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| orig_rb_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| origx_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| origy_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| origz_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| pad_resolution_map() (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| prepare_kernels() (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| prepare_lowres_map(em::DensityMap *dmap) (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| prepare_poslist(em::DensityMap *dmap) (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| prepare_poslist_flipped(em::DensityMap *dmap) (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| prepare_probe(atom::Hierarchy mol2fit) (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| resolution_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| reversed_fftw_data_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| rots_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| sampled_map_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| sampled_map_data_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| sampled_norm_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| set_check_level(CheckLevel l) | IMP::base::Object | |
| set_log_level(LogLevel l) | IMP::base::Object | |
| set_name(std::string name) (defined in IMP::base::Object) | IMP::base::Object | |
| set_was_used(bool tf) const | IMP::base::Object | |
| show(std::ostream &out=std::cout) const (defined in IMP::base::Object) | IMP::base::Object | |
| spacing_ (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protected |
| ~FFTFitting() (defined in IMP::multifit::FFTFitting) | IMP::multifit::FFTFitting | protectedvirtual |
| ~Object() (defined in IMP::base::Object) | IMP::base::Object | virtual |
