IMP  2.2.1
The Integrative Modeling Platform
IMP::isd::FretRestraint Member List

This is the complete list of members for IMP::isd::FretRestraint, including all inherited members.

add_score_and_derivatives(ScoreAccumulator sa) const IMP::kernel::Restraint
clear_caches()IMP::base::Objectvirtual
create_current_decomposition() const IMP::kernel::Restraint
create_decomposition() const IMP::kernel::Restraint
create_scoring_function(double weight=1.0, double max=NO_MAX) const IMP::kernel::Restraintvirtual
do_add_score_and_derivatives(ScoreAccumulator sa) const IMP::kernel::Restraintprotectedvirtual
do_create_current_decomposition() const IMP::kernel::Restraintprotectedvirtual
do_create_decomposition() const IMP::kernel::Restraintprotectedvirtual
do_destroy()IMP::base::Objectvirtual
do_get_inputs() const IMP::isd::FretRestraintvirtual
do_get_interactions() const IMP::kernel::ModelObjectprotectedvirtual
do_get_outputs() const IMP::kernel::Restraintprotectedvirtual
FretRestraint(kernel::Particles pd, kernel::Particles pa, kernel::Particle *kda, kernel::Particle *Ida, kernel::Particle *R0, kernel::Particle *sigma0, kernel::Particle *Pbl, double fexp, double m_d=1.0, double m_a=1.0)IMP::isd::FretRestraint
FretRestraint(kernel::Particle *kda, kernel::Particle *Ida, kernel::Particle *sumFi, kernel::Particle *sigma0, kernel::Particle *Pbl, double fexp) (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
FretRestraint(kernel::Particle *prd, algebra::Vector3D GMMterd, algebra::Vector3Ds GMMctrd, Floats GMMwd, Floats GMMsigd, kernel::Particle *pra, algebra::Vector3D GMMtera, algebra::Vector3Ds GMMctra, Floats GMMwa, Floats GMMsiga, kernel::Particle *kda, kernel::Particle *Ida, kernel::Particle *sigma0, kernel::Particle *Pbl, FretData *data, double fexp) (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
get_average_sigma(double fmod) const (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
get_check_level() const (defined in IMP::base::Object)IMP::base::Object
get_experimental_value() const (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
get_has_dependencies() const IMP::kernel::ModelObject
get_has_required_score_states() const IMP::kernel::ModelObject
get_inputs() const IMP::kernel::ModelObject
get_interactions() const IMP::kernel::ModelObject
get_last_score() const IMP::kernel::Restraintvirtual
get_log_level() const (defined in IMP::base::Object)IMP::base::Object
get_maximum_score() const (defined in IMP::kernel::Restraint)IMP::kernel::Restraint
get_model() const (defined in IMP::kernel::ModelObject)IMP::kernel::ModelObject
get_model_fretr() const (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
get_name() const (defined in IMP::base::Object)IMP::base::Object
get_outputs() const IMP::kernel::ModelObject
get_probability() const (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
get_required_score_states() const IMP::kernel::ModelObject
get_score() const IMP::kernel::Restraint
get_standard_error() const (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
get_sumFi() const (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
get_type_name() const (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraintvirtual
get_version_info() const IMP::isd::FretRestraintvirtual
get_was_good() const IMP::kernel::Restraint
get_weight() const (defined in IMP::kernel::Restraint)IMP::kernel::Restraint
handle_set_has_required_score_states(bool)IMP::kernel::ModelObjectprotectedvirtual
ModelObject(kernel::Model *m, std::string name) (defined in IMP::kernel::ModelObject)IMP::kernel::ModelObject
NonCopyable() (defined in IMP::base::NonCopyable)IMP::base::NonCopyableprotected
Object(std::string name)IMP::base::Objectprotected
Restraint(kernel::Model *m, std::string name)IMP::kernel::Restraint
set_check_level(CheckLevel l)IMP::base::Object
set_experimental_value(double fexp) (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraint
set_has_dependencies(bool tf)IMP::kernel::ModelObject
set_has_required_score_states(bool tf)IMP::kernel::ModelObject
set_log_level(LogLevel l)IMP::base::Object
set_maximum_score(double s) (defined in IMP::kernel::Restraint)IMP::kernel::Restraint
set_name(std::string name) (defined in IMP::base::Object)IMP::base::Object
set_was_used(bool tf) const IMP::base::Object
set_weight(Float weight) (defined in IMP::kernel::Restraint)IMP::kernel::Restraint
show(std::ostream &out=std::cout) const (defined in IMP::base::Object)IMP::base::Object
unprotected_evaluate(IMP::kernel::DerivativeAccumulator *accum) const IMP::isd::FretRestraintvirtual
~FretRestraint() (defined in IMP::isd::FretRestraint)IMP::isd::FretRestraintprotectedvirtual
~ModelObject() (defined in IMP::kernel::ModelObject)IMP::kernel::ModelObject
~Object() (defined in IMP::base::Object)IMP::base::Objectvirtual