IMP  2.2.1
The Integrative Modeling Platform
IMP::atom::CHARMMTopology Member List

This is the complete list of members for IMP::atom::CHARMMTopology, including all inherited members.

add_atom_types(Hierarchy hierarchy) const IMP::atom::CHARMMTopology
add_bonds(Hierarchy hierarchy) const IMP::atom::CHARMMTopology
add_charges(Hierarchy hierarchy) const IMP::atom::CHARMMTopology
add_coordinates(Hierarchy hierarchy) const IMP::atom::CHARMMTopology
add_dihedrals(Hierarchy hierarchy) const IMP::atom::CHARMMTopology
add_impropers(Hierarchy hierarchy) const IMP::atom::CHARMMTopology
add_missing_atoms(Hierarchy hierarchy) const IMP::atom::CHARMMTopology
add_segment(CHARMMSegmentTopology *obj) (defined in IMP::atom::CHARMMTopology)IMP::atom::CHARMMTopology
add_segments(const CHARMMSegmentTopologies &objs) (defined in IMP::atom::CHARMMTopology)IMP::atom::CHARMMTopology
add_sequence(std::string sequence)IMP::atom::CHARMMTopology
apply_default_patches()IMP::atom::CHARMMTopology
CHARMMTopology(const CHARMMParameters *force_field, std::string name="CHARMM topology %1%") (defined in IMP::atom::CHARMMTopology)IMP::atom::CHARMMTopology
clear_caches()IMP::base::Objectvirtual
clear_segments() (defined in IMP::atom::CHARMMTopology)IMP::atom::CHARMMTopology
create_hierarchy(kernel::Model *model) const IMP::atom::CHARMMTopology
do_destroy()IMP::base::Objectvirtual
get_check_level() const (defined in IMP::base::Object)IMP::base::Object
get_has_segments() (defined in IMP::atom::CHARMMTopology)IMP::atom::CHARMMTopology
get_log_level() const (defined in IMP::base::Object)IMP::base::Object
get_name() const (defined in IMP::base::Object)IMP::base::Object
get_number_of_segments() const (defined in IMP::atom::CHARMMTopology)IMP::atom::CHARMMTopology
get_parameters() (defined in IMP::atom::CHARMMTopology)IMP::atom::CHARMMTopology
get_segment(unsigned int i) const (defined in IMP::atom::CHARMMTopology)IMP::atom::CHARMMTopology
get_segments() const (defined in IMP::atom::CHARMMTopology)IMP::atom::CHARMMTopology
get_type_name() const (defined in IMP::atom::CHARMMTopology)IMP::atom::CHARMMTopologyvirtual
get_version_info() const IMP::atom::CHARMMTopologyvirtual
NonCopyable() (defined in IMP::base::NonCopyable)IMP::base::NonCopyableprotected
Object(std::string name)IMP::base::Objectprotected
remove_segment(CHARMMSegmentTopology *d) (defined in IMP::atom::CHARMMTopology)IMP::atom::CHARMMTopology
remove_segments(const CHARMMSegmentTopologies &d) (defined in IMP::atom::CHARMMTopology)IMP::atom::CHARMMTopology
reserve_segments(unsigned int sz) (defined in IMP::atom::CHARMMTopology)IMP::atom::CHARMMTopology
set_check_level(CheckLevel l)IMP::base::Object
set_log_level(LogLevel l)IMP::base::Object
set_name(std::string name) (defined in IMP::base::Object)IMP::base::Object
set_segments(const CHARMMSegmentTopologies &ps) (defined in IMP::atom::CHARMMTopology)IMP::atom::CHARMMTopology
set_segments_order(const CHARMMSegmentTopologies &objs) (defined in IMP::atom::CHARMMTopology)IMP::atom::CHARMMTopology
set_was_used(bool tf) const IMP::base::Object
setup_hierarchy(Hierarchy hierarchy) const IMP::atom::CHARMMTopology
show(std::ostream &out=std::cout) const (defined in IMP::base::Object)IMP::base::Object
~CHARMMTopology() (defined in IMP::atom::CHARMMTopology)IMP::atom::CHARMMTopologyprotectedvirtual
~Object() (defined in IMP::base::Object)IMP::base::Objectvirtual