IMP  2.2.0
The Integrative Modeling Platform
em/embedding.h
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1 /**
2  * \file IMP/em/embedding.h
3  * \brief Cluster sets of points.
4  *
5  * Copyright 2007-2014 IMP Inventors. All rights reserved.
6  *
7  */
8 
9 #ifndef IMPEM_EMBEDDING_H
10 #define IMPEM_EMBEDDING_H
11 
12 #include <IMP/em/em_config.h>
13 #include "DensityMap.h"
14 #include <IMP/statistics/Embedding.h>
15 
16 IMPEM_BEGIN_NAMESPACE
17 
18 /** Generate a set of points from the voxels in a em::DensityMap
19  which are above a certain threshold.
20  */
21 class IMPEMEXPORT HighDensityEmbedding : public statistics::Embedding {
22  algebra::Vector3Ds points_;
23 
24  public:
25  HighDensityEmbedding(DensityMap *dm, double threshold);
26  algebra::VectorKD get_point(unsigned int i) const IMP_OVERRIDE;
27  unsigned int get_number_of_items() const IMP_OVERRIDE;
28  IMP_OBJECT_METHODS(HighDensityEmbedding);
29 };
30 
31 IMPEM_END_NAMESPACE
32 
33 #endif /* IMPEM_EMBEDDING_H */
DensityMap.h
Class for handling density maps.
IMP::em::DensityMap
Class for handling density maps.
Definition: DensityMap.h:94
IMP_OBJECT_METHODS
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition: base/object_macros.h:25
IMP::statistics::Embedding
Store data to be clustered for embedding based algorithms.
Definition: statistics/embedding.h:25
Embedding.h
Cluster sets of points.
IMP::algebra::VectorKD
VectorD<-1 > VectorKD
Definition: VectorD.h:411