IMP  2.2.0
The Integrative Modeling Platform
IMP::multifit::FFTFitting Member List

This is the complete list of members for IMP::multifit::FFTFitting, including all inherited members.

asmb_norm_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
best_fits_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
best_trans_per_rot_log_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
cen_trans_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
clear_caches()IMP::base::Objectvirtual
copy_density_data(em::DensityMap *dmap, double *data_array) (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
copy_mol_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
corr_mode_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
crop_margin(em::DensityMap *in_map) (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
detect_top_fits(const internal::RotScoresVec &rot_scores, bool cluster_fits, double max_translation, double max_clustering_trans, double max_clustering_rotation)IMP::multifit::FFTFittingprotected
do_destroy()IMP::base::Objectvirtual
do_global_fitting(em::DensityMap *dmap, double density_threshold, atom::Hierarchy mol2fit, double angle_sampling_interval_rad, int num_fits_to_report, double max_clustering_translation, double max_clustering_angle, bool cluster_fits=true, int num_angle_per_voxel=1, const std::string &angles_filename="")IMP::multifit::FFTFitting
do_local_fitting(em::DensityMap *dmap, double density_threshold, atom::Hierarchy mol2fit, double angle_sampling_interval_rad, double max_angle_sampling_rad, double max_translation, int num_fits_to_report, bool cluster_fits, int num_angle_per_voxel, double max_clustering_translation, double max_clustering_rotation, const std::string &angles_filename="")IMP::multifit::FFTFitting
fft_scores_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
fft_scores_flipped_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
FFTFitting() (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFitting
fftw_grid_hi_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
fftw_grid_lo_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
fftw_nvox_c2r_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
fftw_nvox_r2c_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
fftw_pad_factor_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
fftw_plan_forward_hi_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
fftw_plan_forward_lo_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
fftw_plan_reverse_hi_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
fftw_r_grid_mol_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
fftw_scale_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
fftw_translational_search(const multifit::internal::EulerAngles &rot, int i) (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
fftw_zero_padding_extent_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
filtered_kernel_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
filtered_kernel_ext_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
fits_hash_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
gauss_kernel_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
gauss_kernel_ext_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
gauss_kernel_nvox_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
get_check_level() const (defined in IMP::base::Object)IMP::base::Object
get_log_level() const (defined in IMP::base::Object)IMP::base::Object
get_name() const (defined in IMP::base::Object)IMP::base::Object
get_type_name() const (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingvirtual
get_unwrapped_index(int wx, int wy, int wz, int &ix, int &iy, int &iz) (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
get_version_info() const IMP::multifit::FFTFittingvirtual
high_mol_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
inside_num_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
inside_num_flipped_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
kernel_filter_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
kernel_filter_ext_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
low_cutoff_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
low_map_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
low_map_data_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
map_cen_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
margin_ignored_in_conv_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
NonCopyable() (defined in IMP::base::NonCopyable)IMP::base::NonCopyableprotected
num_angle_per_voxel_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
num_fits_reported_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
nvox_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
nx_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
nx_half_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
ny_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
ny_half_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
nz_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
nz_half_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
Object(std::string name)IMP::base::Objectprotected
orig_cen_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
orig_mol_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
orig_mol_copy_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
orig_rb_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
origx_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
origy_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
origz_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
pad_resolution_map() (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
prepare_kernels() (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
prepare_lowres_map(em::DensityMap *dmap) (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
prepare_poslist(em::DensityMap *dmap) (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
prepare_poslist_flipped(em::DensityMap *dmap) (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
prepare_probe(atom::Hierarchy mol2fit) (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
resolution_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
reversed_fftw_data_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
rots_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
sampled_map_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
sampled_map_data_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
sampled_norm_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
set_check_level(CheckLevel l)IMP::base::Object
set_log_level(LogLevel l)IMP::base::Object
set_name(std::string name) (defined in IMP::base::Object)IMP::base::Object
set_was_used(bool tf) const IMP::base::Object
show(std::ostream &out=std::cout) const (defined in IMP::base::Object)IMP::base::Object
spacing_ (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotected
~FFTFitting() (defined in IMP::multifit::FFTFitting)IMP::multifit::FFTFittingprotectedvirtual
~Object() (defined in IMP::base::Object)IMP::base::Objectvirtual