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2.2.0
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IMP::em::PCAFitRestraint Member List
This is the complete list of members for
IMP::em::PCAFitRestraint
, including all inherited members.
add_particle
(kernel::Particle *obj) (defined in
IMP::em::PCAFitRestraint
)
IMP::em::PCAFitRestraint
add_particles
(const kernel::Particles &objs) (defined in
IMP::em::PCAFitRestraint
)
IMP::em::PCAFitRestraint
add_score_and_derivatives
(ScoreAccumulator sa) const
IMP::kernel::Restraint
clear_caches
()
IMP::base::Object
virtual
clear_particles
() (defined in
IMP::em::PCAFitRestraint
)
IMP::em::PCAFitRestraint
create_current_decomposition
() const
IMP::kernel::Restraint
create_decomposition
() const
IMP::kernel::Restraint
create_scoring_function
(double weight=1.0, double max=NO_MAX) const
IMP::kernel::Restraint
virtual
do_add_score_and_derivatives
(ScoreAccumulator sa) const
IMP::kernel::Restraint
protected
virtual
do_create_current_decomposition
() const
IMP::kernel::Restraint
protected
virtual
do_create_decomposition
() const
IMP::kernel::Restraint
protected
virtual
do_destroy
()
IMP::base::Object
virtual
do_get_inputs
() const
IMP::em::PCAFitRestraint
virtual
do_get_interactions
() const
IMP::kernel::ModelObject
protected
virtual
do_get_outputs
() const
IMP::kernel::Restraint
protected
virtual
get_check_level
() const (defined in
IMP::base::Object
)
IMP::base::Object
get_has_dependencies
() const
IMP::kernel::ModelObject
get_has_particles
() (defined in
IMP::em::PCAFitRestraint
)
IMP::em::PCAFitRestraint
get_has_required_score_states
() const
IMP::kernel::ModelObject
get_inputs
() const
IMP::kernel::ModelObject
get_interactions
() const
IMP::kernel::ModelObject
get_last_score
() const
IMP::kernel::Restraint
virtual
get_log_level
() const (defined in
IMP::base::Object
)
IMP::base::Object
get_maximum_score
() const (defined in
IMP::kernel::Restraint
)
IMP::kernel::Restraint
get_model
() const (defined in
IMP::kernel::ModelObject
)
IMP::kernel::ModelObject
get_name
() const (defined in
IMP::base::Object
)
IMP::base::Object
get_number_of_particles
() const (defined in
IMP::em::PCAFitRestraint
)
IMP::em::PCAFitRestraint
get_outputs
() const
IMP::kernel::ModelObject
get_particle
(unsigned int i) const (defined in
IMP::em::PCAFitRestraint
)
IMP::em::PCAFitRestraint
get_particles
() const (defined in
IMP::em::PCAFitRestraint
)
IMP::em::PCAFitRestraint
get_required_score_states
() const
IMP::kernel::ModelObject
get_score
() const
IMP::kernel::Restraint
get_type_name
() const (defined in
IMP::em::PCAFitRestraint
)
IMP::em::PCAFitRestraint
virtual
get_version_info
() const
IMP::em::PCAFitRestraint
virtual
get_was_good
() const
IMP::kernel::Restraint
get_weight
() const (defined in
IMP::kernel::Restraint
)
IMP::kernel::Restraint
handle_set_has_required_score_states
(bool)
IMP::kernel::ModelObject
protected
virtual
ModelObject
(kernel::Model *m, std::string name) (defined in
IMP::kernel::ModelObject
)
IMP::kernel::ModelObject
NonCopyable
() (defined in
IMP::base::NonCopyable
)
IMP::base::NonCopyable
protected
Object
(std::string name)
IMP::base::Object
protected
PCAFitRestraint
(kernel::ParticlesTemp ps, DensityMap *em_map, float threahold, float max_pca_size_diff, float max_angle_diff, float max_centroid_diff, FloatKey weight_key=atom::Mass::get_mass_key())
IMP::em::PCAFitRestraint
remove_particle
(kernel::Particle *d) (defined in
IMP::em::PCAFitRestraint
)
IMP::em::PCAFitRestraint
remove_particles
(const kernel::Particles &d) (defined in
IMP::em::PCAFitRestraint
)
IMP::em::PCAFitRestraint
reserve_particles
(unsigned int sz) (defined in
IMP::em::PCAFitRestraint
)
IMP::em::PCAFitRestraint
Restraint
(kernel::Model *m, std::string name)
IMP::kernel::Restraint
set_check_level
(CheckLevel l)
IMP::base::Object
set_has_dependencies
(bool tf)
IMP::kernel::ModelObject
set_has_required_score_states
(bool tf)
IMP::kernel::ModelObject
set_log_level
(LogLevel l)
IMP::base::Object
set_maximum_score
(double s) (defined in
IMP::kernel::Restraint
)
IMP::kernel::Restraint
set_name
(std::string name) (defined in
IMP::base::Object
)
IMP::base::Object
set_particles
(const kernel::Particles &ps) (defined in
IMP::em::PCAFitRestraint
)
IMP::em::PCAFitRestraint
set_particles_order
(const kernel::Particles &objs) (defined in
IMP::em::PCAFitRestraint
)
IMP::em::PCAFitRestraint
set_was_used
(bool tf) const
IMP::base::Object
set_weight
(Float weight) (defined in
IMP::kernel::Restraint
)
IMP::kernel::Restraint
show
(std::ostream &out=std::cout) const (defined in
IMP::base::Object
)
IMP::base::Object
unprotected_evaluate
(IMP::kernel::DerivativeAccumulator *accum) const (defined in
IMP::em::PCAFitRestraint
)
IMP::em::PCAFitRestraint
virtual
~ModelObject
() (defined in
IMP::kernel::ModelObject
)
IMP::kernel::ModelObject
~Object
() (defined in
IMP::base::Object
)
IMP::base::Object
virtual
~PCAFitRestraint
() (defined in
IMP::em::PCAFitRestraint
)
IMP::em::PCAFitRestraint
protected
virtual