| Argument typedef (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
| clear_caches() | IMP::base::Object | virtual |
| create_current_decomposition(kernel::Model *m, const kernel::ParticleIndexPair &vt) const | IMP::kernel::PairScore | |
| do_create_current_decomposition(kernel::Model *m, const kernel::ParticleIndexPair &vt) const | IMP::kernel::PairScore | protectedvirtual |
| do_destroy() | IMP::base::Object | virtual |
| do_get_inputs(kernel::Model *m, const kernel::ParticleIndexes &pis) const | IMP::core::HarmonicUpperBoundSphereDiameterPairScore | virtual |
| evaluate(const kernel::ParticlePair &vt, DerivativeAccumulator *da) const | IMP::kernel::PairScore | virtual |
| evaluate_if_good_index(kernel::Model *m, const kernel::ParticleIndexPair &vt, DerivativeAccumulator *da, double max) const | IMP::kernel::PairScore | virtual |
| evaluate_if_good_indexes(kernel::Model *m, const kernel::ParticleIndexPairs &p, DerivativeAccumulator *da, double max, unsigned int lower_bound, unsigned int upper_bound) const | IMP::core::HarmonicUpperBoundSphereDiameterPairScore | virtual |
| evaluate_index(kernel::Model *m, const kernel::ParticleIndexPair &p, DerivativeAccumulator *da) const | IMP::core::HarmonicUpperBoundSphereDiameterPairScore | virtual |
| evaluate_indexes(kernel::Model *m, const kernel::ParticleIndexPairs &p, DerivativeAccumulator *da, unsigned int lower_bound, unsigned int upper_bound) const | IMP::core::HarmonicUpperBoundSphereDiameterPairScore | virtual |
| get_check_level() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_input_containers(Particle *p) const | IMP::kernel::ParticleInputs | virtual |
| get_input_particles(Particle *p) const | IMP::kernel::ParticleInputs | virtual |
| get_inputs(kernel::Model *m, const ParticleIndexes &pis) const | IMP::kernel::ParticleInputs | |
| get_log_level() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_name() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_rest_length() const (defined in IMP::core::HarmonicUpperBoundSphereDiameterPairScore) | IMP::core::HarmonicUpperBoundSphereDiameterPairScore | |
| get_stiffness() const (defined in IMP::core::HarmonicUpperBoundSphereDiameterPairScore) | IMP::core::HarmonicUpperBoundSphereDiameterPairScore | |
| get_type_name() const (defined in IMP::core::HarmonicUpperBoundSphereDiameterPairScore) | IMP::core::HarmonicUpperBoundSphereDiameterPairScore | virtual |
| get_version_info() const | IMP::core::HarmonicUpperBoundSphereDiameterPairScore | virtual |
| HarmonicUpperBoundSphereDiameterPairScore(double d0, double k) (defined in IMP::core::HarmonicUpperBoundSphereDiameterPairScore) | IMP::core::HarmonicUpperBoundSphereDiameterPairScore | |
| IndexArgument typedef (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
| Modifier typedef (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
| NonCopyable() (defined in IMP::base::NonCopyable) | IMP::base::NonCopyable | protected |
| Object(std::string name) | IMP::base::Object | protected |
| PairScore(std::string name="PairScore %1%") (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
| PassArgument typedef (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
| PassIndexArgument typedef (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
| set_check_level(CheckLevel l) | IMP::base::Object | |
| set_log_level(LogLevel l) | IMP::base::Object | |
| set_name(std::string name) (defined in IMP::base::Object) | IMP::base::Object | |
| set_was_used(bool tf) const | IMP::base::Object | |
| show(std::ostream &out=std::cout) const (defined in IMP::base::Object) | IMP::base::Object | |
| ~HarmonicUpperBoundSphereDiameterPairScore() (defined in IMP::core::HarmonicUpperBoundSphereDiameterPairScore) | IMP::core::HarmonicUpperBoundSphereDiameterPairScore | protectedvirtual |
| ~Object() (defined in IMP::base::Object) | IMP::base::Object | virtual |
| ~ParticleInputs() (defined in IMP::kernel::ParticleInputs) | IMP::kernel::ParticleInputs | protectedvirtual |
