 |
IMP
2.2.0
The Integrative Modeling Platform
|
|
IMP
2.2.0
The Integrative Modeling Platform
|
This is the complete list of members for IMP::atom::CHARMMAtom, including all inherited members.
| add_child(Hierarchy o) | IMP::atom::Hierarchy | |
| add_child(Hierarchy h) const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| add_child_at(Hierarchy h, unsigned int pos) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| Atom() (defined in IMP::atom::Atom) | IMP::atom::Atom | |
| Atom(::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) (defined in IMP::atom::Atom) | IMP::atom::Atom | |
| Atom(const IMP::kernel::ParticleAdaptor &d) (defined in IMP::atom::Atom) | IMP::atom::Atom | explicit |
| CHARMMAtom() (defined in IMP::atom::CHARMMAtom) | IMP::atom::CHARMMAtom | |
| CHARMMAtom(::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) (defined in IMP::atom::CHARMMAtom) | IMP::atom::CHARMMAtom | |
| CHARMMAtom(const IMP::kernel::ParticleAdaptor &d) (defined in IMP::atom::CHARMMAtom) | IMP::atom::CHARMMAtom | explicit |
| clear_children() (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| decorate_particle(::IMP::kernel::Particle *p) | IMP::atom::CHARMMAtom | static |
| IMP::atom::Hierarchy::decorate_particle(::IMP::kernel::Particle *p, const HierarchyTraits &tr=get_default_traits()) | IMP::core::Hierarchy | static |
| Decorator(Model *m, ParticleIndex pi) (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | protected |
| Decorator() (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | protected |
| Decorator(ParticleAdaptor p) (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | explicitprotected |
| DecoratorTraits typedef (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| get_as_atom() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_as_chain() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_as_domain() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_as_fragment() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_as_mass() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_as_molecule() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_as_residue() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_as_xyz() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_as_xyzr() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_atom_type() const (defined in IMP::atom::Atom) | IMP::atom::Atom | |
| get_atom_type_key() (defined in IMP::atom::Atom) | IMP::atom::Atom | static |
| get_charmm_type() const (defined in IMP::atom::CHARMMAtom) | IMP::atom::CHARMMAtom | |
| get_charmm_type_key() (defined in IMP::atom::CHARMMAtom) | IMP::atom::CHARMMAtom | static |
| get_child(unsigned int i) const | IMP::atom::Hierarchy | |
| get_child_index(unsigned int i) const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| get_child_index() const | IMP::core::Hierarchy | |
| get_children() const | IMP::atom::Hierarchy | |
| get_children() const | IMP::atom::Hierarchy | |
| get_children_indexes() const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| get_decorator_traits() const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| get_default_decorator_traits() (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| get_default_traits() | IMP::core::Hierarchy | static |
| get_element() const | IMP::atom::Atom | |
| get_element_key() (defined in IMP::atom::Atom) | IMP::atom::Atom | static |
| get_input_index() const (defined in IMP::atom::Atom) | IMP::atom::Atom | |
| get_input_index_key() (defined in IMP::atom::Atom) | IMP::atom::Atom | static |
| get_is_setup(const IMP::kernel::ParticleAdaptor &p) (defined in IMP::atom::CHARMMAtom) | IMP::atom::CHARMMAtom | static |
| get_is_setup(kernel::Model *m, kernel::ParticleIndex pi) | IMP::atom::CHARMMAtom | static |
| get_is_setup(const IMP::kernel::ParticleAdaptor &p, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| IMP::core::Hierarchy::get_is_setup(kernel::Model *, kernel::ParticleIndex, HierarchyTraits=Hierarchy::get_default_traits()) | IMP::core::Hierarchy | static |
| get_is_valid(bool print_info) const | IMP::atom::Hierarchy | |
| get_model() const | IMP::kernel::Decorator | |
| get_number_of_children() const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| get_occupancy() const (defined in IMP::atom::Atom) | IMP::atom::Atom | |
| get_occupancy_key() (defined in IMP::atom::Atom) | IMP::atom::Atom | static |
| get_parent() const | IMP::atom::Hierarchy | |
| get_particle() const | IMP::kernel::Decorator | |
| get_particle_index() const | IMP::kernel::Decorator | |
| get_temperature_factor() const (defined in IMP::atom::Atom) | IMP::atom::Atom | |
| get_temperature_factor_key() (defined in IMP::atom::Atom) | IMP::atom::Atom | static |
| get_traits() | IMP::atom::Hierarchy | static |
| Hierarchy(kernel::Model *m, kernel::ParticleIndex pi) (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| Hierarchy(kernel::ParticleAdaptor pi) (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| Hierarchy() | IMP::atom::Hierarchy | |
| Hierarchy(IMP::core::Hierarchy h) | IMP::atom::Hierarchy | explicit |
| Hierarchy(::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| Hierarchy(const IMP::kernel::ParticleAdaptor &d, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | explicit |
| operator Particle *() const (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | |
| operator ParticleIndex() const (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | |
| operator->() const (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | |
| remove_child(unsigned int i) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| remove_child(Hierarchy h) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| set_atom_type(AtomType t) | IMP::atom::Atom | |
| set_charmm_type(String t) (defined in IMP::atom::CHARMMAtom) | IMP::atom::CHARMMAtom | |
| set_input_index(Int t) (defined in IMP::atom::Atom) | IMP::atom::Atom | |
| set_occupancy(double occupancy) (defined in IMP::atom::Atom) | IMP::atom::Atom | |
| set_temperature_factor(double tempFactor) (defined in IMP::atom::Atom) | IMP::atom::Atom | |
| setup_particle(kernel::Model *m, ParticleIndex pi, String charmm_type) | IMP::atom::CHARMMAtom | static |
| setup_particle(IMP::kernel::ParticleAdaptor decorator, String charmm_type) | IMP::atom::CHARMMAtom | static |
| IMP::atom::Atom::setup_particle(kernel::Model *m, ParticleIndex pi, Atom other) | IMP::atom::Atom | static |
| IMP::atom::Atom::setup_particle(IMP::kernel::ParticleAdaptor decorator, Atom other) | IMP::atom::Atom | static |
| IMP::atom::Atom::setup_particle(kernel::Model *m, ParticleIndex pi, AtomType atom_type) | IMP::atom::Atom | static |
| IMP::atom::Atom::setup_particle(IMP::kernel::ParticleAdaptor decorator, AtomType atom_type) | IMP::atom::Atom | static |
| IMP::atom::Hierarchy::setup_particle(kernel::Model *m, kernel::ParticleIndex pi, kernel::ParticleIndexesAdaptor children=kernel::ParticleIndexesAdaptor()) | IMP::atom::Hierarchy | static |
| IMP::core::Hierarchy::setup_particle(kernel::Model *m, ParticleIndex pi, DecoratorTraits tr=get_default_decorator_traits()) | IMP::core::Hierarchy | static |
| setup_particle(IMP::kernel::ParticleAdaptor d, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| IMP::core::Hierarchy::setup_particle(kernel::Model *m, ParticleIndex pi, kernel::ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits()) | IMP::core::Hierarchy | static |
| setup_particle(IMP::kernel::ParticleAdaptor d, kernel::ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| setup_particle(kernel::Model *m, ParticleIndex pi, kernel::ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| setup_particle(IMP::kernel::ParticleAdaptor d, kernel::ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| show(std::ostream &out=std::cout) const (defined in IMP::atom::CHARMMAtom) | IMP::atom::CHARMMAtom | |
| Value() (defined in IMP::base::Value) | IMP::base::Value | protected |