IMP  2.2.0
The Integrative Modeling Platform
IMP::atom::CHARMMAtom Member List

This is the complete list of members for IMP::atom::CHARMMAtom, including all inherited members.

add_child(Hierarchy o)IMP::atom::Hierarchy
add_child(Hierarchy h) const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
add_child_at(Hierarchy h, unsigned int pos) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
Atom() (defined in IMP::atom::Atom)IMP::atom::Atom
Atom(::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) (defined in IMP::atom::Atom)IMP::atom::Atom
Atom(const IMP::kernel::ParticleAdaptor &d) (defined in IMP::atom::Atom)IMP::atom::Atomexplicit
CHARMMAtom() (defined in IMP::atom::CHARMMAtom)IMP::atom::CHARMMAtom
CHARMMAtom(::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) (defined in IMP::atom::CHARMMAtom)IMP::atom::CHARMMAtom
CHARMMAtom(const IMP::kernel::ParticleAdaptor &d) (defined in IMP::atom::CHARMMAtom)IMP::atom::CHARMMAtomexplicit
clear_children() (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
decorate_particle(::IMP::kernel::Particle *p)IMP::atom::CHARMMAtomstatic
IMP::atom::Hierarchy::decorate_particle(::IMP::kernel::Particle *p, const HierarchyTraits &tr=get_default_traits())IMP::core::Hierarchystatic
Decorator(Model *m, ParticleIndex pi) (defined in IMP::kernel::Decorator)IMP::kernel::Decoratorprotected
Decorator() (defined in IMP::kernel::Decorator)IMP::kernel::Decoratorprotected
Decorator(ParticleAdaptor p) (defined in IMP::kernel::Decorator)IMP::kernel::Decoratorexplicitprotected
DecoratorTraits typedef (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_as_atom() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_as_chain() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_as_domain() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_as_fragment() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_as_mass() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_as_molecule() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_as_residue() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_as_xyz() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_as_xyzr() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_atom_type() const (defined in IMP::atom::Atom)IMP::atom::Atom
get_atom_type_key() (defined in IMP::atom::Atom)IMP::atom::Atomstatic
get_charmm_type() const (defined in IMP::atom::CHARMMAtom)IMP::atom::CHARMMAtom
get_charmm_type_key() (defined in IMP::atom::CHARMMAtom)IMP::atom::CHARMMAtomstatic
get_child(unsigned int i) const IMP::atom::Hierarchy
get_child_index(unsigned int i) const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_child_index() const IMP::core::Hierarchy
get_children() const IMP::atom::Hierarchy
get_children() const IMP::atom::Hierarchy
get_children_indexes() const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_decorator_traits() const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_default_decorator_traits() (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
get_default_traits()IMP::core::Hierarchystatic
get_element() const IMP::atom::Atom
get_element_key() (defined in IMP::atom::Atom)IMP::atom::Atomstatic
get_input_index() const (defined in IMP::atom::Atom)IMP::atom::Atom
get_input_index_key() (defined in IMP::atom::Atom)IMP::atom::Atomstatic
get_is_setup(const IMP::kernel::ParticleAdaptor &p) (defined in IMP::atom::CHARMMAtom)IMP::atom::CHARMMAtomstatic
get_is_setup(kernel::Model *m, kernel::ParticleIndex pi)IMP::atom::CHARMMAtomstatic
get_is_setup(const IMP::kernel::ParticleAdaptor &p, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
IMP::core::Hierarchy::get_is_setup(kernel::Model *, kernel::ParticleIndex, HierarchyTraits=Hierarchy::get_default_traits())IMP::core::Hierarchystatic
get_is_valid(bool print_info) const IMP::atom::Hierarchy
get_model() const IMP::kernel::Decorator
get_number_of_children() const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_occupancy() const (defined in IMP::atom::Atom)IMP::atom::Atom
get_occupancy_key() (defined in IMP::atom::Atom)IMP::atom::Atomstatic
get_parent() const IMP::atom::Hierarchy
get_particle() const IMP::kernel::Decorator
get_particle_index() const IMP::kernel::Decorator
get_temperature_factor() const (defined in IMP::atom::Atom)IMP::atom::Atom
get_temperature_factor_key() (defined in IMP::atom::Atom)IMP::atom::Atomstatic
get_traits()IMP::atom::Hierarchystatic
Hierarchy(kernel::Model *m, kernel::ParticleIndex pi) (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
Hierarchy(kernel::ParticleAdaptor pi) (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
Hierarchy()IMP::atom::Hierarchy
Hierarchy(IMP::core::Hierarchy h)IMP::atom::Hierarchyexplicit
Hierarchy(::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
Hierarchy(const IMP::kernel::ParticleAdaptor &d, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchyexplicit
operator Particle *() const (defined in IMP::kernel::Decorator)IMP::kernel::Decorator
operator ParticleIndex() const (defined in IMP::kernel::Decorator)IMP::kernel::Decorator
operator->() const (defined in IMP::kernel::Decorator)IMP::kernel::Decorator
remove_child(unsigned int i) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
remove_child(Hierarchy h) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
set_atom_type(AtomType t)IMP::atom::Atom
set_charmm_type(String t) (defined in IMP::atom::CHARMMAtom)IMP::atom::CHARMMAtom
set_input_index(Int t) (defined in IMP::atom::Atom)IMP::atom::Atom
set_occupancy(double occupancy) (defined in IMP::atom::Atom)IMP::atom::Atom
set_temperature_factor(double tempFactor) (defined in IMP::atom::Atom)IMP::atom::Atom
setup_particle(kernel::Model *m, ParticleIndex pi, String charmm_type)IMP::atom::CHARMMAtomstatic
setup_particle(IMP::kernel::ParticleAdaptor decorator, String charmm_type)IMP::atom::CHARMMAtomstatic
IMP::atom::Atom::setup_particle(kernel::Model *m, ParticleIndex pi, Atom other)IMP::atom::Atomstatic
IMP::atom::Atom::setup_particle(IMP::kernel::ParticleAdaptor decorator, Atom other)IMP::atom::Atomstatic
IMP::atom::Atom::setup_particle(kernel::Model *m, ParticleIndex pi, AtomType atom_type)IMP::atom::Atomstatic
IMP::atom::Atom::setup_particle(IMP::kernel::ParticleAdaptor decorator, AtomType atom_type)IMP::atom::Atomstatic
IMP::atom::Hierarchy::setup_particle(kernel::Model *m, kernel::ParticleIndex pi, kernel::ParticleIndexesAdaptor children=kernel::ParticleIndexesAdaptor())IMP::atom::Hierarchystatic
IMP::core::Hierarchy::setup_particle(kernel::Model *m, ParticleIndex pi, DecoratorTraits tr=get_default_decorator_traits())IMP::core::Hierarchystatic
setup_particle(IMP::kernel::ParticleAdaptor d, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
IMP::core::Hierarchy::setup_particle(kernel::Model *m, ParticleIndex pi, kernel::ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits())IMP::core::Hierarchystatic
setup_particle(IMP::kernel::ParticleAdaptor d, kernel::ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
setup_particle(kernel::Model *m, ParticleIndex pi, kernel::ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
setup_particle(IMP::kernel::ParticleAdaptor d, kernel::ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
show(std::ostream &out=std::cout) const (defined in IMP::atom::CHARMMAtom)IMP::atom::CHARMMAtom
Value() (defined in IMP::base::Value)IMP::base::Valueprotected