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EzRestraint.h
Go to the documentation of this file.
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/**
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* \file IMP/atom/EzRestraint.h
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* \brief Ez potential. A statistical scoring function for atom proteins
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*
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* Copyright 2007-2014 IMP Inventors. All rights reserved.
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*/
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#ifndef IMPATOM_EZ_RESTRAINT_H
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#define IMPATOM_EZ_RESTRAINT_H
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#include <IMP/atom/atom_config.h>
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#include <
IMP/kernel/Restraint.h
>
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#include <
IMP/kernel/Particle.h
>
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#include <
IMP/UnaryFunction.h
>
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#include <
IMP/base_types.h
>
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#include <string>
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IMPATOM_BEGIN_NAMESPACE
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//! Ez Potential kernel::Restraint
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/** Ez, a Depth-dependent Potential for Assessing the Energies of
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Insertion of Amino Acid Side-chains into Membranes.
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Senes et al. J. Mol. Biol. (2007) 366, 436–448
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*/
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class
IMPATOMEXPORT
EzRestraint
:
public
kernel::Restraint
{
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kernel::Particles
ps_;
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UnaryFunctions
ufs_;
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Floats
get_parameters(std::string restype);
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protected
:
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virtual
double
unprotected_evaluate(
DerivativeAccumulator
*da)
const
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IMP_OVERRIDE;
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virtual
kernel::ModelObjectsTemp
do_get_inputs
()
const
IMP_OVERRIDE;
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public
:
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EzRestraint
(
kernel::Particles
ps);
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IMP_OBJECT_METHODS
(
EzRestraint
);
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};
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IMPATOM_END_NAMESPACE
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#endif
/* IMPATOM_EZ_RESTRAINT_H */
IMP::kernel::UnaryFunctions
IMP::base::Vector< IMP::base::Pointer< UnaryFunction > > UnaryFunctions
Definition:
kernel/UnaryFunction.h:56
base_types.h
Import IMP/kernel/base_types.h in the namespace.
IMP::kernel::DerivativeAccumulator
Class for adding derivatives from restraints to the model.
Definition:
kernel/DerivativeAccumulator.h:25
UnaryFunction.h
Import IMP/kernel/UnaryFunction.h in the namespace.
IMP::base::Vector< base::Pointer< Particle > >
Restraint.h
Abstract base class for all restraints.
IMP::kernel::Restraint
A restraint is a term in an IMP ScoringFunction.
Definition:
kernel/Restraint.h:52
IMP_OBJECT_METHODS
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Definition:
base/object_macros.h:25
Particle.h
Classes to handle individual model particles.
IMP::kernel::ModelObject::do_get_inputs
virtual ModelObjectsTemp do_get_inputs() const =0
IMP::atom::EzRestraint
Ez Potential kernel::Restraint.
Definition:
EzRestraint.h:25