masking.h

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/**
 *  \file IMP/em/masking.h
 *  \brief masking tools
 *
 *  Copyright 2007-2013 IMP Inventors. All rights reserved.
 *
 */

#ifndef IMPEM_MASKING_H
#define IMPEM_MASKING_H

#include <IMP/em/em_config.h>
#include <IMP/base_types.h>
#include "DensityHeader.h"
#include "KernelParameters.h"
IMPEM_BEGIN_NAMESPACE
/** Mask based on the distance. */
class IMPEMEXPORT RadiusDependentDistanceMask {
  //class  RadiusDependentDistanceMask {
public:
  RadiusDependentDistanceMask(
        float sampling_radius, const DensityHeader &header);
  inline const std::vector<double> *get_neighbor_shift() const {
    return &neighbor_shift_;}
  inline const std::vector<double> *get_neighbor_dist() const {
    return &neighbor_dist_;}
  inline const std::vector<double> *get_neighbor_dist_exp() const {
    return &neighbor_dist_exp_;}

  void show(std::ostream& out) const { out << "RadiusDependentDistanceMask"; }
protected:
  std::vector<double> neighbor_shift_;
  std::vector<double> neighbor_dist_;
  std::vector<double> neighbor_dist_exp_;
};

//! Calculates and stores a distance mask
class IMPEMEXPORT DistanceMask
//class  DistanceMask
{
public:
  DistanceMask() {
    initialized_ = false;
  }

  DistanceMask(const DensityHeader *header) {
    header_=header;
    initialized_ = true;
  }

  void show(std::ostream& out) const { out << "DistanceMask"; }
#if !defined(SWIG) && !defined(IMP_DOXYGEN)
  //! Sets the parameters that depend on the radius of a given particle.
  const RadiusDependentDistanceMask* set_mask(float radius);

  //! Finds the precomputed mask given a particle radius.
  /**
    \param[in] radius searching for parameters of this radius
    \param[in] eps used for numerical stability
    \note The parameters are indexes by the radius. To maintain
    numeratical stability, look for a radius within +-eps from the
    queried radius.
   \note the function return nullptr and writes a warning if parameters
   for this radius were not found.
  */
  const RadiusDependentDistanceMask* get_mask(
        float radius,float eps=0.001) const;
#endif
  bool is_mask_set(float radius,float eps=0.001) {
    return get_mask(radius, eps) != nullptr;
  }
protected:
  typedef
    std::map<float, const RadiusDependentDistanceMask*> MASK_MAP;
  bool initialized_;
  MASK_MAP masks_;
  const DensityHeader *header_;
  KernelParameters kernel_params_;
};

IMPEM_END_NAMESPACE
#endif  /* IMPEM_MASKING_H */