| add_attribute(TypeKey attribute_key, ParticleIndex particle, Type value) | IMP::kernel::Model | |
| add_cache_attribute(TypeKey attribute_key, ParticleIndex particle, Type value) | IMP::kernel::Model | |
| add_data(kernel::ModelKey mk, base::Object *o) | IMP::kernel::Model | |
| add_particle(std::string name) | IMP::kernel::Model | |
| add_score_state(ScoreState *obj) (defined in IMP::kernel::Model) | IMP::kernel::Model | |
| add_score_states(const ScoreStates &objs) (defined in IMP::kernel::Model) | IMP::kernel::Model | |
| add_undecorator(ParticleIndex pi, Undecorator *d) | IMP::kernel::Model | |
| clear_caches() | IMP::base::Object | virtual |
| clear_particle_caches(ParticleIndex pi) | IMP::kernel::Model | |
| clear_score_states() (defined in IMP::kernel::Model) | IMP::kernel::Model | |
| do_destroy() | IMP::base::Object | virtual |
| evaluate(bool tf, bool warn=true) | IMP::kernel::Model | |
| get_attribute(TypeKey attribute_key, ParticleIndex particle) | IMP::kernel::Model | |
| get_check_level() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_data(kernel::ModelKey mk) const | IMP::kernel::Model | |
| get_has_attribute(TypeKey attribute_key, ParticleIndex particle) const (defined in IMP::kernel::Model) | IMP::kernel::Model | |
| get_has_data(kernel::ModelKey mk) const | IMP::kernel::Model | |
| get_has_particle(ParticleIndex p) const | IMP::kernel::Model | |
| get_has_score_states() (defined in IMP::kernel::Model) | IMP::kernel::Model | |
| get_log_level() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_maximum_score(Restraint *r) const | IMP::kernel::Model | |
| get_maximum_score() const | IMP::kernel::Model | |
| get_model_objects() const | IMP::kernel::Model | |
| get_name() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_number_of_particles() const | IMP::kernel::Model | |
| get_number_of_restraints() const | IMP::kernel::Model | |
| get_number_of_score_states() const (defined in IMP::kernel::Model) | IMP::kernel::Model | |
| get_optimized_particles() const | IMP::kernel::Model | |
| get_particle(ParticleIndex p) const | IMP::kernel::Model | |
| get_particle_indexes() | IMP::kernel::Model | |
| get_particle_name(ParticleIndex pi) | IMP::kernel::Model | |
| get_particles() const | IMP::kernel::Model | |
| get_restraint(unsigned int i) const | IMP::kernel::Model | |
| get_root_restraint_set() | IMP::kernel::Model | |
| get_score_state(unsigned int i) const (defined in IMP::kernel::Model) | IMP::kernel::Model | |
| get_score_states() const (defined in IMP::kernel::Model) | IMP::kernel::Model | |
| get_type_name() const (defined in IMP::kernel::Model) | IMP::kernel::Model | virtual |
| get_version_info() const | IMP::kernel::Model | virtual |
| Model(std::string name="Model %1%") | IMP::kernel::Model | |
| NonCopyable() (defined in IMP::base::NonCopyable) | IMP::base::NonCopyable | protected |
| Object(std::string name) | IMP::base::Object | protected |
| Object() | IMP::base::Object | protected |
| operator Restraint *() const | IMP::kernel::Model | |
| particles_begin() const | IMP::kernel::Model | |
| particles_end() const | IMP::kernel::Model | |
| remove_attribute(TypeKey attribute_key, ParticleIndex particle) | IMP::kernel::Model | |
| remove_data(kernel::ModelKey mk) | IMP::kernel::Model | |
| remove_particle(ParticleIndex pi) | IMP::kernel::Model | |
| remove_particle(Particle *p) | IMP::kernel::Model | |
| remove_score_state(ScoreState *d) (defined in IMP::kernel::Model) | IMP::kernel::Model | |
| remove_score_states(const ScoreStates &d) (defined in IMP::kernel::Model) | IMP::kernel::Model | |
| reserve_score_states(unsigned int sz) (defined in IMP::kernel::Model) | IMP::kernel::Model | |
| set_attribute(TypeKey attribute_key, ParticleIndex particle, Type value) | IMP::kernel::Model | |
| set_check_level(CheckLevel l) | IMP::base::Object | |
| set_is_optimized(TypeKey attribute_key, ParticleIndex particle, bool true_or_false) | IMP::kernel::Model | |
| set_log_level(LogLevel l) | IMP::base::Object | |
| set_maximum_score(Restraint *r, double s) | IMP::kernel::Model | |
| set_maximum_score(double s) | IMP::kernel::Model | |
| set_name(std::string name) (defined in IMP::base::Object) | IMP::base::Object | |
| set_score_states(const ScoreStates &ps) (defined in IMP::kernel::Model) | IMP::kernel::Model | |
| set_score_states_order(const ScoreStates &objs) (defined in IMP::kernel::Model) | IMP::kernel::Model | |
| set_was_used(bool tf) const | IMP::base::Object | |
| show(std::ostream &out=std::cout) const (defined in IMP::base::Object) | IMP::base::Object | |
| update() | IMP::kernel::Model | |
