| after_evaluate(DerivativeAccumulator *accpt) | IMP::kernel::ScoreState | |
| apply(const PairModifier *sm) const | IMP::kernel::PairContainer | |
| apply_generic(const PairModifier *m) const | IMP::kernel::PairContainer | |
| before_evaluate() | IMP::kernel::ScoreState | |
| clear_caches() | IMP::base::Object | virtual |
| CloseBipartitePairContainer(SingletonContainerAdaptor a, SingletonContainerAdaptor b, double distance, double slack=1, std::string name="CloseBipartitePairContainer%1%") | IMP::container::CloseBipartitePairContainer | |
| ContainedIndexType typedef (defined in IMP::kernel::PairContainer) | IMP::kernel::PairContainer | |
| ContainedIndexTypes typedef (defined in IMP::kernel::PairContainer) | IMP::kernel::PairContainer | |
| ContainedType typedef (defined in IMP::kernel::PairContainer) | IMP::kernel::PairContainer | |
| ContainedTypes typedef (defined in IMP::kernel::PairContainer) | IMP::kernel::PairContainer | |
| Container(kernel::Model *m, std::string name="Container %1%") (defined in IMP::kernel::Container) | IMP::kernel::Container | protected |
| do_after_evaluate(DerivativeAccumulator *accpt) | IMP::kernel::Container | virtual |
| do_apply(const PairModifier *sm) const (defined in IMP::container::CloseBipartitePairContainer) | IMP::container::CloseBipartitePairContainer | virtual |
| do_before_evaluate() (defined in IMP::container::CloseBipartitePairContainer) | IMP::container::CloseBipartitePairContainer | virtual |
| do_destroy() | IMP::base::Object | virtual |
| do_get_inputs() const | IMP::container::CloseBipartitePairContainer | virtual |
| do_get_interactions() const | IMP::kernel::ModelObject | protectedvirtual |
| do_get_outputs() const | IMP::kernel::Container | virtual |
| do_get_provides_access() const (defined in IMP::kernel::PairContainer) | IMP::kernel::PairContainer | protectedvirtual |
| do_set_model(kernel::Model *) | IMP::kernel::ModelObject | virtual |
| get_all_possible_indexes() const | IMP::container::CloseBipartitePairContainer | virtual |
| get_all_possible_particles() const | IMP::kernel::Container | |
| get_check_level() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_contains_particle_pair(ParticlePair v) const | IMP::kernel::PairContainer | |
| get_contents_version() const | IMP::kernel::Container | |
| get_has_dependencies() const | IMP::kernel::ModelObject | |
| get_has_required_score_states() const | IMP::kernel::ModelObject | |
| get_indexes() const | IMP::container::CloseBipartitePairContainer | virtual |
| get_input_containers() const | IMP::kernel::ScoreState | |
| get_input_particles() const | IMP::kernel::ScoreState | |
| get_inputs() const | IMP::kernel::ModelObject | |
| get_interactions() const | IMP::kernel::ModelObject | |
| get_is_changed() const | IMP::kernel::Container | |
| get_is_decomposable() const | IMP::kernel::Container | virtual |
| get_is_part_of_model() const | IMP::kernel::ModelObject | |
| get_log_level() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_model() const (defined in IMP::kernel::ModelObject) | IMP::kernel::ModelObject | |
| get_name() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_number_of_particle_pairs() const | IMP::kernel::PairContainer | |
| get_output_containers() const | IMP::kernel::ScoreState | |
| get_output_particles() const | IMP::kernel::ScoreState | |
| get_outputs() const | IMP::kernel::ModelObject | |
| get_particle_pair(unsigned int i) const | IMP::kernel::PairContainer | |
| get_particle_pairs() const | IMP::kernel::PairContainer | |
| get_range_indexes() const | IMP::container::CloseBipartitePairContainer | virtual |
| get_required_score_states() const | IMP::kernel::ModelObject | |
| get_type_name() const (defined in IMP::container::CloseBipartitePairContainer) | IMP::container::CloseBipartitePairContainer | virtual |
| get_version_info() const | IMP::container::CloseBipartitePairContainer | virtual |
| handle_set_has_required_score_states(bool) | IMP::kernel::ModelObject | protectedvirtual |
| IMP_LIST_ACTION(public, PairPredicate, PairPredicates, pair_filter, pair_filters, PairPredicate *, PairPredicates, obj->set_was_used(true);,,) (defined in IMP::container::CloseBipartitePairContainer) | IMP::container::CloseBipartitePairContainer | |
| ModelObject(kernel::Model *m, std::string name) (defined in IMP::kernel::ModelObject) | IMP::kernel::ModelObject | |
| ModelObject(std::string name) | IMP::kernel::ModelObject | |
| NonCopyable() (defined in IMP::base::NonCopyable) | IMP::base::NonCopyable | protected |
| Object(std::string name) | IMP::base::Object | protected |
| Object() | IMP::base::Object | protected |
| PairContainer(kernel::Model *m, std::string name="PairContainer %1%") (defined in IMP::kernel::PairContainer) | IMP::kernel::PairContainer | protected |
| ScoreState(kernel::Model *m, std::string name) (defined in IMP::kernel::ScoreState) | IMP::kernel::ScoreState | |
| ScoreState(kernel::Model *m) | IMP::kernel::ScoreState | |
| ScoreState(std::string name="ScoreState %1%") | IMP::kernel::ScoreState | |
| set_check_level(CheckLevel l) | IMP::base::Object | |
| set_has_dependencies(bool tf) | IMP::kernel::ModelObject | |
| set_has_required_score_states(bool tf) | IMP::kernel::ModelObject | |
| set_is_changed(bool tf) | IMP::kernel::Container | protected |
| set_log_level(LogLevel l) | IMP::base::Object | |
| set_model(kernel::Model *m) | IMP::kernel::ModelObject | virtual |
| set_name(std::string name) (defined in IMP::base::Object) | IMP::base::Object | |
| set_was_used(bool tf) const | IMP::base::Object | |
| show(std::ostream &out=std::cout) const (defined in IMP::base::Object) | IMP::base::Object | |
| ~ModelObject() (defined in IMP::kernel::ModelObject) | IMP::kernel::ModelObject | |
