IMP::atom::CHARMMTopology Member List

This is the complete list of members for IMP::atom::CHARMMTopology, including all inherited members.

add_atom_types(Hierarchy hierarchy) const	IMP::atom::CHARMMTopology
add_bonds(Hierarchy hierarchy) const	IMP::atom::CHARMMTopology
add_charges(Hierarchy hierarchy) const	IMP::atom::CHARMMTopology
add_coordinates(Hierarchy hierarchy) const	IMP::atom::CHARMMTopology
add_dihedrals(Hierarchy hierarchy) const	IMP::atom::CHARMMTopology
add_impropers(Hierarchy hierarchy) const	IMP::atom::CHARMMTopology
add_missing_atoms(Hierarchy hierarchy) const	IMP::atom::CHARMMTopology
add_segment(CHARMMSegmentTopology *obj) (defined in IMP::atom::CHARMMTopology)	IMP::atom::CHARMMTopology
add_segments(const CHARMMSegmentTopologies &objs) (defined in IMP::atom::CHARMMTopology)	IMP::atom::CHARMMTopology
add_sequence(std::string sequence)	IMP::atom::CHARMMTopology
apply_default_patches()	IMP::atom::CHARMMTopology
CHARMMTopology(const CHARMMParameters *force_field, std::string name="CHARMM topology %1%") (defined in IMP::atom::CHARMMTopology)	IMP::atom::CHARMMTopology
clear_caches()	IMP::base::Object	virtual
clear_segments() (defined in IMP::atom::CHARMMTopology)	IMP::atom::CHARMMTopology
create_hierarchy(kernel::Model *model) const	IMP::atom::CHARMMTopology
do_destroy()	IMP::base::Object	virtual
get_check_level() const (defined in IMP::base::Object)	IMP::base::Object
get_has_segments() (defined in IMP::atom::CHARMMTopology)	IMP::atom::CHARMMTopology
get_log_level() const (defined in IMP::base::Object)	IMP::base::Object
get_name() const (defined in IMP::base::Object)	IMP::base::Object
get_number_of_segments() const (defined in IMP::atom::CHARMMTopology)	IMP::atom::CHARMMTopology
get_parameters() (defined in IMP::atom::CHARMMTopology)	IMP::atom::CHARMMTopology
get_segment(unsigned int i) const (defined in IMP::atom::CHARMMTopology)	IMP::atom::CHARMMTopology
get_segments() const (defined in IMP::atom::CHARMMTopology)	IMP::atom::CHARMMTopology
get_type_name() const (defined in IMP::atom::CHARMMTopology)	IMP::atom::CHARMMTopology	virtual
get_version_info() const	IMP::atom::CHARMMTopology	virtual
NonCopyable() (defined in IMP::base::NonCopyable)	IMP::base::NonCopyable	protected
Object(std::string name)	IMP::base::Object	protected
Object()	IMP::base::Object	protected
remove_segment(CHARMMSegmentTopology *d) (defined in IMP::atom::CHARMMTopology)	IMP::atom::CHARMMTopology
remove_segments(const CHARMMSegmentTopologies &d) (defined in IMP::atom::CHARMMTopology)	IMP::atom::CHARMMTopology
reserve_segments(unsigned int sz) (defined in IMP::atom::CHARMMTopology)	IMP::atom::CHARMMTopology
set_check_level(CheckLevel l)	IMP::base::Object
set_log_level(LogLevel l)	IMP::base::Object
set_name(std::string name) (defined in IMP::base::Object)	IMP::base::Object
set_segments(const CHARMMSegmentTopologies &ps) (defined in IMP::atom::CHARMMTopology)	IMP::atom::CHARMMTopology
set_segments_order(const CHARMMSegmentTopologies &objs) (defined in IMP::atom::CHARMMTopology)	IMP::atom::CHARMMTopology
set_was_used(bool tf) const	IMP::base::Object
setup_hierarchy(Hierarchy hierarchy) const	IMP::atom::CHARMMTopology
show(std::ostream &out=std::cout) const (defined in IMP::base::Object)	IMP::base::Object