CysteineCrossLinkData.h

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/**
 *  \file isd/CysteineCrossLinkData.h    \brief Normal distribution of Function
 *
 *  Copyright 2007-2013 IMP Inventors. All rights reserved.
 */

#ifndef IMPISD_CYSTEINE_CROSS_LINK_DATA_H
#define IMPISD_CYSTEINE_CROSS_LINK_DATA_H

#include "isd_config.h"
#include <IMP/macros.h>
#include <IMP/kernel/Model.h>
#include <IMP/constants.h>
#include <math.h>

IMPISD_BEGIN_NAMESPACE

//! CysteineCrossLinkData
/**
 */

class IMPISDEXPORT CysteineCrossLinkData : public base::Object
{
    Floats omega0_grid_;//the typical uncertainty, it goes in the prior
    Floats fmod_grid_;
    double fexp_;
    int prior_type_;
    Floats omega_grid_;
    std::vector<Floats> grid_;
    double get_element(double fexp, double fmod, double omega) const;
    double get_omega_prior(double omega, double omega0) const;


 public:

  CysteineCrossLinkData(double fexp, Floats fmod_grid,
                        Floats omega_grid, Floats omega0_grid,
                        int prior_type=3);

  int get_closest(std::vector<double> const& vec, double value) const;
  Floats get_omegas(Floats fmods, double omega0) const;
  Floats get_nonmarginal_elements(double fexp, Floats fmods,
                                             double omega) const;
  Floats get_marginal_elements(Floats fmods, double omega0) const ;

  double get_omega(double fmod, double omega0) const;
  double get_standard_deviation(double fmod, double omega0) const;
  double get_nonmarginal_element(double fexp, double fmod, double omega) const;
  double get_marginal_element(double fmod, double omega0) const ;

  IMP_OBJECT_METHODS(CysteineCrossLinkData);

};

IMPISD_END_NAMESPACE

#endif  /* IMPISD_CYSTEINE_CROSS_LINK_DATA_H */