IMP  2.1.0
The Integrative Modeling Platform
IMP::saxs::Profile Member List

This is the complete list of members for IMP::saxs::Profile, including all inherited members.

add(const Profile *other_profile, Float weight=1.0)IMP::saxs::Profile
add(const std::vector< Profile * > &profiles, const std::vector< Float > &weights=std::vector< Float >())IMP::saxs::Profile
add_entry(Float q, Float intensity, Float error=1.0)IMP::saxs::Profile
add_errors()IMP::saxs::Profile
add_noise(Float percentage=0.03)IMP::saxs::Profile
add_partial_profiles(const Profile *other_profile, Float weight=1.0)IMP::saxs::Profile
add_partial_profiles(const std::vector< Profile * > &profiles, const std::vector< Float > &weights=std::vector< Float >())IMP::saxs::Profile
average_radius_ (defined in IMP::saxs::Profile)IMP::saxs::Profileprotected
average_volume_ (defined in IMP::saxs::Profile)IMP::saxs::Profileprotected
background_adjust(double start_q)IMP::saxs::Profile
calculate_I0(const kernel::Particles &particles, FormFactorType ff_type=HEAVY_ATOMS)IMP::saxs::Profile
calculate_profile(const kernel::Particles &particles, FormFactorType ff_type=HEAVY_ATOMS, bool reciprocal=false, bool variance=false, double variance_tau=0.1)IMP::saxs::Profile
calculate_profile(const kernel::Particles &particles1, const kernel::Particles &particles2, FormFactorType ff_type=HEAVY_ATOMS, bool variance=false, double variance_tau=0.1)IMP::saxs::Profile
calculate_profile_constant_form_factor(const kernel::Particles &particles, Float form_factor=1.0)IMP::saxs::Profile
calculate_profile_partial(const kernel::Particles &particles, const Floats &surface=Floats(), FormFactorType ff_type=HEAVY_ATOMS)IMP::saxs::Profile
calculate_profile_partial(const kernel::Particles &particles1, const kernel::Particles &particles2, const Floats &surface1=Floats(), const Floats &surface2=Floats(), FormFactorType ff_type=HEAVY_ATOMS)IMP::saxs::Profile
calculate_profile_reciprocal_partial(const kernel::Particles &particles, const Floats &surface=Floats(), FormFactorType ff_type=HEAVY_ATOMS) (defined in IMP::saxs::Profile)IMP::saxs::Profile
calculate_profile_symmetric(const kernel::Particles &particles, unsigned int n, FormFactorType ff_type=HEAVY_ATOMS) (defined in IMP::saxs::Profile)IMP::saxs::Profile
clear_caches()IMP::base::Objectvirtual
copy_errors(const Profile *exp_profile) (defined in IMP::saxs::Profile)IMP::saxs::Profile
delta_q_ (defined in IMP::saxs::Profile)IMP::saxs::Profileprotected
distribution_2_profile(const RadialDistributionFunction &r_dist)IMP::saxs::Profile
do_destroy()IMP::base::Objectvirtual
downsample(Profile *downsampled_profile, unsigned int point_number) const IMP::saxs::Profile
error_ (defined in IMP::saxs::Profile)IMP::saxs::Profileprotected
experimental_ (defined in IMP::saxs::Profile)IMP::saxs::Profileprotected
ff_table_ (defined in IMP::saxs::Profile)IMP::saxs::Profileprotected
get_average_radius() const (defined in IMP::saxs::Profile)IMP::saxs::Profile
get_check_level() const (defined in IMP::base::Object)IMP::base::Object
get_delta_q() const IMP::saxs::Profile
get_error(unsigned int i) const (defined in IMP::saxs::Profile)IMP::saxs::Profile
get_id() const (defined in IMP::saxs::Profile)IMP::saxs::Profile
get_intensity(unsigned int i) const (defined in IMP::saxs::Profile)IMP::saxs::Profile
get_log_level() const (defined in IMP::base::Object)IMP::base::Object
get_max_q() const IMP::saxs::Profile
get_min_q() const IMP::saxs::Profile
get_name() const (defined in IMP::saxs::Profile)IMP::saxs::Profile
get_q(unsigned int i) const (defined in IMP::saxs::Profile)IMP::saxs::Profile
get_type_name() const (defined in IMP::saxs::Profile)IMP::saxs::Profilevirtual
get_variance(unsigned int i, unsigned int j) const (defined in IMP::saxs::Profile)IMP::saxs::Profile
get_version_info() const IMP::saxs::Profilevirtual
get_weight(unsigned int i) const (defined in IMP::saxs::Profile)IMP::saxs::Profile
id_ (defined in IMP::saxs::Profile)IMP::saxs::Profileprotected
intensity_ (defined in IMP::saxs::Profile)IMP::saxs::Profileprotected
is_uniform_sampling() const IMP::saxs::Profile
max_q_ (defined in IMP::saxs::Profile)IMP::saxs::Profileprotected
min_q_ (defined in IMP::saxs::Profile)IMP::saxs::Profileprotected
modulation_function_parameter_ (defined in IMP::saxs::Profile)IMP::saxs::Profilestatic
name_ (defined in IMP::saxs::Profile)IMP::saxs::Profileprotected
NonCopyable() (defined in IMP::base::NonCopyable)IMP::base::NonCopyableprotected
Object(std::string name)IMP::base::Objectprotected
Object()IMP::base::Objectprotected
offset(Float c)IMP::saxs::Profile
partial_profiles_ (defined in IMP::saxs::Profile)IMP::saxs::Profileprotected
Profile(const String &file_name, bool fit_file=false)IMP::saxs::Profile
Profile(Float qmin=0.0, Float qmax=0.5, Float delta=0.005)IMP::saxs::Profile
profile_2_distribution(RadialDistributionFunction &rd, Float max_distance) const IMP::saxs::Profile
q_ (defined in IMP::saxs::Profile)IMP::saxs::Profileprotected
q_mapping_ (defined in IMP::saxs::Profile)IMP::saxs::Profileprotected
radius_of_gyration(double end_q_rg=1.3) const IMP::saxs::Profile
read_partial_profiles(const String &file_name)IMP::saxs::Profile
read_SAXS_file(const String &file_name, bool fit_file=false)IMP::saxs::Profile
resample(const Profile *exp_profile, Profile *resampled_profile, bool partial_profiles=false) const IMP::saxs::Profile
scale(Float c)IMP::saxs::Profile
set_average_radius(Float r) (defined in IMP::saxs::Profile)IMP::saxs::Profile
set_average_volume(Float v) (defined in IMP::saxs::Profile)IMP::saxs::Profile
set_check_level(CheckLevel l)IMP::base::Object
set_ff_table(FormFactorTable *ff_table)IMP::saxs::Profile
set_id(unsigned int id) (defined in IMP::saxs::Profile)IMP::saxs::Profile
set_intensity(unsigned int i, Float iq) (defined in IMP::saxs::Profile)IMP::saxs::Profile
set_log_level(LogLevel l)IMP::base::Object
set_name(std::string name) (defined in IMP::saxs::Profile)IMP::saxs::Profile
set_was_used(bool tf) const IMP::base::Object
show(std::ostream &out=std::cout) const (defined in IMP::base::Object)IMP::base::Object
size() const IMP::saxs::Profile
sum_partial_profiles(Float c1, Float c2)IMP::saxs::Profile
variances_ (defined in IMP::saxs::Profile)IMP::saxs::Profileprotected
write_partial_profiles(const String &file_name) const IMP::saxs::Profile
write_SAXS_file(const String &file_name, Float max_q=0.0) const IMP::saxs::Profile