IMP  2.1.0
The Integrative Modeling Platform
IMP::isd::CysteineCrossLinkRestraint Member List

This is the complete list of members for IMP::isd::CysteineCrossLinkRestraint, including all inherited members.

add_contribution(kernel::Particle *p1, kernel::Particle *p2) (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
add_contribution(kernel::Particles p1, kernel::Particles p2) (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
add_score_and_derivatives(ScoreAccumulator sa) const IMP::kernel::Restraint
clear_caches()IMP::base::Objectvirtual
constIMP::isd::CysteineCrossLinkRestraint
create_current_decomposition() const IMP::kernel::Restraint
create_decomposition() const IMP::kernel::Restraint
create_scoring_function(double weight=1.0, double max=NO_MAX) const IMP::kernel::Restraintvirtual
CysteineCrossLinkRestraint(kernel::Particle *beta, kernel::Particle *sigma, kernel::Particle *epsilon, kernel::Particle *weight, CrossLinkData *data, double fexp)IMP::isd::CysteineCrossLinkRestraint
CysteineCrossLinkRestraint(kernel::Particle *beta, kernel::Particle *sigma, kernel::Particle *epsilon, kernel::Particle *weight, CrossLinkData *data, CysteineCrossLinkData *ccldata) (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
do_add_score_and_derivatives(ScoreAccumulator sa) const IMP::kernel::Restraintprotectedvirtual
do_create_current_decomposition() const IMP::kernel::Restraintprotectedvirtual
do_create_decomposition() const IMP::kernel::Restraintprotectedvirtual
do_destroy()IMP::base::Objectvirtual
do_get_inputs() const IMP::isd::CysteineCrossLinkRestraintvirtual
do_get_interactions() const IMP::kernel::ModelObjectprotectedvirtual
do_get_outputs() const IMP::kernel::Restraintprotectedvirtual
do_set_model(kernel::Model *)IMP::kernel::ModelObjectvirtual
get_CB_coordinates(const kernel::Particles &ps) const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_check_level() const (defined in IMP::base::Object)IMP::base::Object
get_distances() const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_frequencies() const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_has_dependencies() const IMP::kernel::ModelObject
get_has_required_score_states() const IMP::kernel::ModelObject
get_input_containers() const IMP::kernel::Restraint
get_input_particles() const IMP::kernel::Restraint
get_inputs() const IMP::kernel::ModelObject
get_interactions() const IMP::kernel::ModelObject
get_is_part_of_model() const IMP::kernel::ModelObject
get_last_score() const IMP::kernel::Restraintvirtual
get_log_level() const (defined in IMP::base::Object)IMP::base::Object
get_maximum_score() const (defined in IMP::kernel::Restraint)IMP::kernel::Restraint
get_model() const (defined in IMP::kernel::ModelObject)IMP::kernel::ModelObject
get_model_frequency() const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_name() const (defined in IMP::base::Object)IMP::base::Object
get_normal_pdf(double mean, double sigma, double x) const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_number_of_contributions() const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_outputs() const IMP::kernel::ModelObject
get_probability() const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_required_score_states() const IMP::kernel::ModelObject
get_score() const IMP::kernel::Restraint
get_standard_error() const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_truncated_normalization(double mean, double sigma) const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraint
get_type_name() const (defined in IMP::isd::CysteineCrossLinkRestraint)IMP::isd::CysteineCrossLinkRestraintvirtual
get_version_info() const IMP::isd::CysteineCrossLinkRestraintvirtual
get_was_good() const IMP::kernel::Restraint
get_weight() const (defined in IMP::kernel::Restraint)IMP::kernel::Restraint
handle_set_has_required_score_states(bool)IMP::kernel::ModelObjectprotectedvirtual
ModelObject(kernel::Model *m, std::string name) (defined in IMP::kernel::ModelObject)IMP::kernel::ModelObject
ModelObject(std::string name)IMP::kernel::ModelObject
NonCopyable() (defined in IMP::base::NonCopyable)IMP::base::NonCopyableprotected
Object(std::string name)IMP::base::Objectprotected
Object()IMP::base::Objectprotected
Restraint(kernel::Model *m, std::string name)IMP::kernel::Restraint
Restraint(std::string name="Restraint %1%")IMP::kernel::Restraint
set_check_level(CheckLevel l)IMP::base::Object
set_has_dependencies(bool tf)IMP::kernel::ModelObject
set_has_required_score_states(bool tf)IMP::kernel::ModelObject
set_log_level(LogLevel l)IMP::base::Object
set_maximum_score(double s) (defined in IMP::kernel::Restraint)IMP::kernel::Restraint
set_model(kernel::Model *m)IMP::kernel::ModelObjectvirtual
set_name(std::string name) (defined in IMP::base::Object)IMP::base::Object
set_was_used(bool tf) const IMP::base::Object
set_weight(Float weight) (defined in IMP::kernel::Restraint)IMP::kernel::Restraint
show(std::ostream &out=std::cout) const (defined in IMP::base::Object)IMP::base::Object
~ModelObject() (defined in IMP::kernel::ModelObject)IMP::kernel::ModelObject