| add_to_derivatives(const Floats &x1, const Floats &x2, DerivativeAccumulator &accum) const | IMP::isd::Covariance1DFunction | virtual |
| add_to_particle_derivative(unsigned particle_no, double value, DerivativeAccumulator &accum) const | IMP::isd::Covariance1DFunction | virtual |
| BivariateFunction(std::string str) (defined in IMP::isd::BivariateFunction) | IMP::isd::BivariateFunction | |
| clear_caches() | IMP::base::Object | virtual |
| Covariance1DFunction(kernel::Particle *tau, kernel::Particle *ilambda, double alpha=2.0, double jitter=0.0, double cutoff=1e-7) (defined in IMP::isd::Covariance1DFunction) | IMP::isd::Covariance1DFunction | |
| do_destroy() | IMP::base::Object | virtual |
| get_check_level() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_derivative_matrix(unsigned particle_no, const FloatsList &xlist) const | IMP::isd::Covariance1DFunction | virtual |
| get_derivative_matrix(unsigned particle_no, const FloatsList &xlist, bool) const (defined in IMP::isd::Covariance1DFunction) | IMP::isd::Covariance1DFunction | virtual |
| get_input_containers() const (defined in IMP::isd::Covariance1DFunction) | IMP::isd::Covariance1DFunction | virtual |
| get_input_particles() const | IMP::isd::Covariance1DFunction | virtual |
| get_log_level() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_name() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_ndims_x1() const | IMP::isd::Covariance1DFunction | virtual |
| get_ndims_x2() const (defined in IMP::isd::Covariance1DFunction) | IMP::isd::Covariance1DFunction | virtual |
| get_ndims_y() const | IMP::isd::Covariance1DFunction | virtual |
| get_number_of_optimized_particles() const | IMP::isd::Covariance1DFunction | virtual |
| get_number_of_particles() const | IMP::isd::Covariance1DFunction | virtual |
| get_particle_is_optimized(unsigned particle_no) const | IMP::isd::Covariance1DFunction | virtual |
| get_second_derivative_matrix(unsigned particle_a, unsigned particle_b, const FloatsList &xlist) const | IMP::isd::Covariance1DFunction | virtual |
| get_second_derivative_matrix(unsigned particle_a, unsigned particle_b, const FloatsList &xlist, bool) const (defined in IMP::isd::Covariance1DFunction) | IMP::isd::Covariance1DFunction | virtual |
| get_type_name() const (defined in IMP::isd::Covariance1DFunction) | IMP::isd::Covariance1DFunction | virtual |
| get_version_info() const | IMP::isd::Covariance1DFunction | virtual |
| has_changed() const | IMP::isd::Covariance1DFunction | virtual |
| NonCopyable() (defined in IMP::base::NonCopyable) | IMP::base::NonCopyable | protected |
| Object(std::string name) | IMP::base::Object | protected |
| Object() | IMP::base::Object | protected |
| operator()(const Floats &x1, const Floats &x2) const | IMP::isd::Covariance1DFunction | virtual |
| operator()(const IMP::FloatsList &xlist) const | IMP::isd::Covariance1DFunction | virtual |
| operator()(const IMP::FloatsList &xlist, bool) const | IMP::isd::Covariance1DFunction | virtual |
| set_check_level(CheckLevel l) | IMP::base::Object | |
| set_log_level(LogLevel l) | IMP::base::Object | |
| set_name(std::string name) (defined in IMP::base::Object) | IMP::base::Object | |
| set_was_used(bool tf) const | IMP::base::Object | |
| show(std::ostream &out=std::cout) const (defined in IMP::base::Object) | IMP::base::Object | |
| update() | IMP::isd::Covariance1DFunction | virtual |
