| add_particle(kernel::Particle *obj) (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
| add_particles(const kernel::Particles &objs) (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
| add_score_and_derivatives(ScoreAccumulator sa) const | IMP::kernel::Restraint | |
| clear_caches() | IMP::base::Object | virtual |
| clear_particles() (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
| const (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
| create_current_decomposition() const | IMP::kernel::Restraint | |
| create_decomposition() const | IMP::kernel::Restraint | |
| create_scoring_function(double weight=1.0, double max=NO_MAX) const | IMP::kernel::Restraint | virtual |
| do_add_score_and_derivatives(ScoreAccumulator sa) const | IMP::kernel::Restraint | protectedvirtual |
| do_create_current_decomposition() const | IMP::kernel::Restraint | protectedvirtual |
| do_create_decomposition() const | IMP::kernel::Restraint | protectedvirtual |
| do_destroy() | IMP::base::Object | virtual |
| do_get_inputs() const | IMP::em::FitRestraint | virtual |
| do_get_interactions() const | IMP::kernel::ModelObject | protectedvirtual |
| do_get_outputs() const | IMP::kernel::Restraint | protectedvirtual |
| do_set_model(kernel::Model *) | IMP::kernel::ModelObject | virtual |
| FitRestraint(kernel::ParticlesTemp ps, DensityMap *em_map, FloatPair norm_factors=FloatPair(0., 0.), FloatKey weight_key=atom::Mass::get_mass_key(), float scale=1, bool use_rigid_bodies=true, KernelType kt=GAUSSIAN) | IMP::em::FitRestraint | |
| get_check_level() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_has_dependencies() const | IMP::kernel::ModelObject | |
| get_has_particles() (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
| get_has_required_score_states() const | IMP::kernel::ModelObject | |
| get_input_containers() const | IMP::kernel::Restraint | |
| get_input_particles() const | IMP::kernel::Restraint | |
| get_inputs() const | IMP::kernel::ModelObject | |
| get_interactions() const | IMP::kernel::ModelObject | |
| get_is_part_of_model() const | IMP::kernel::ModelObject | |
| get_last_score() const | IMP::kernel::Restraint | virtual |
| get_log_level() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_maximum_score() const (defined in IMP::kernel::Restraint) | IMP::kernel::Restraint | |
| get_model() const (defined in IMP::kernel::ModelObject) | IMP::kernel::ModelObject | |
| get_model_dens_map() const | IMP::em::FitRestraint | |
| get_name() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_number_of_particles() const (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
| get_outputs() const | IMP::kernel::ModelObject | |
| get_particle(unsigned int i) const (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
| get_particles() const (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
| get_required_score_states() const | IMP::kernel::ModelObject | |
| get_scale_factor() const (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
| get_score() const | IMP::kernel::Restraint | |
| get_type_name() const (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | virtual |
| get_version_info() const | IMP::em::FitRestraint | virtual |
| get_was_good() const | IMP::kernel::Restraint | |
| get_weight() const (defined in IMP::kernel::Restraint) | IMP::kernel::Restraint | |
| handle_set_has_required_score_states(bool) | IMP::kernel::ModelObject | protectedvirtual |
| ModelObject(kernel::Model *m, std::string name) (defined in IMP::kernel::ModelObject) | IMP::kernel::ModelObject | |
| ModelObject(std::string name) | IMP::kernel::ModelObject | |
| NonCopyable() (defined in IMP::base::NonCopyable) | IMP::base::NonCopyable | protected |
| Object(std::string name) | IMP::base::Object | protected |
| Object() | IMP::base::Object | protected |
| remove_particle(kernel::Particle *d) (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
| remove_particles(const kernel::Particles &d) (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
| reserve_particles(unsigned int sz) (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
| Restraint(kernel::Model *m, std::string name) | IMP::kernel::Restraint | |
| Restraint(std::string name="Restraint %1%") | IMP::kernel::Restraint | |
| set_check_level(CheckLevel l) | IMP::base::Object | |
| set_has_dependencies(bool tf) | IMP::kernel::ModelObject | |
| set_has_required_score_states(bool tf) | IMP::kernel::ModelObject | |
| set_log_level(LogLevel l) | IMP::base::Object | |
| set_maximum_score(double s) (defined in IMP::kernel::Restraint) | IMP::kernel::Restraint | |
| set_model(kernel::Model *m) | IMP::kernel::ModelObject | virtual |
| set_name(std::string name) (defined in IMP::base::Object) | IMP::base::Object | |
| set_particles(const kernel::Particles &ps) (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
| set_particles_order(const kernel::Particles &objs) (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
| set_scale_factor(float scale) (defined in IMP::em::FitRestraint) | IMP::em::FitRestraint | |
| set_was_used(bool tf) const | IMP::base::Object | |
| set_weight(Float weight) (defined in IMP::kernel::Restraint) | IMP::kernel::Restraint | |
| show(std::ostream &out=std::cout) const (defined in IMP::base::Object) | IMP::base::Object | |
| ~ModelObject() (defined in IMP::kernel::ModelObject) | IMP::kernel::ModelObject | |
