| add_close_pair_score(PairScore *ps, double distance, const kernel::ParticlesTemp &particles, const PairPredicates &filters) | IMP::core::IncrementalScoringFunction | |
| add_close_pair_score(PairScore *ps, double distance, const kernel::ParticlesTemp &particles) (defined in IMP::core::IncrementalScoringFunction) | IMP::core::IncrementalScoringFunction | |
| clear_caches() | IMP::base::Object | virtual |
| clear_close_pair_scores() (defined in IMP::core::IncrementalScoringFunction) | IMP::core::IncrementalScoringFunction | |
| create_restraints() const | IMP::core::IncrementalScoringFunction | virtual |
| do_add_score_and_derivatives(IMP::ScoreAccumulator sa, const ScoreStatesTemp &ss) (defined in IMP::core::IncrementalScoringFunction) | IMP::core::IncrementalScoringFunction | |
| IMP::kernel::ScoringFunction::do_add_score_and_derivatives(ScoreAccumulator sa, const ScoreStatesTemp &ss)=0 | IMP::kernel::ScoringFunction | protectedpure virtual |
| do_destroy() | IMP::base::Object | virtual |
| do_get_inputs() const | IMP::core::IncrementalScoringFunction | virtual |
| do_get_interactions() const | IMP::kernel::ModelObject | protectedvirtual |
| do_get_outputs() const | IMP::kernel::ScoringFunction | virtual |
| do_set_model(kernel::Model *) | IMP::kernel::ModelObject | virtual |
| evaluate(bool derivatives) | IMP::kernel::ScoringFunction | |
| evaluate_if_below(bool derivatives, double max) (defined in IMP::kernel::ScoringFunction) | IMP::kernel::ScoringFunction | |
| evaluate_if_good(bool derivatives) (defined in IMP::kernel::ScoringFunction) | IMP::kernel::ScoringFunction | |
| get_check_level() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_had_good_score() const | IMP::kernel::ScoringFunction | |
| get_has_dependencies() const | IMP::kernel::ModelObject | |
| get_has_required_score_states() const | IMP::kernel::ModelObject | |
| get_inputs() const | IMP::kernel::ModelObject | |
| get_interactions() const | IMP::kernel::ModelObject | |
| get_is_part_of_model() const | IMP::kernel::ModelObject | |
| get_last_score() const | IMP::kernel::ScoringFunction | |
| get_log_level() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_model() const (defined in IMP::kernel::ModelObject) | IMP::kernel::ModelObject | |
| get_movable_indexes() const (defined in IMP::core::IncrementalScoringFunction) | IMP::core::IncrementalScoringFunction | |
| get_movable_particles() const | IMP::core::IncrementalScoringFunction | |
| get_name() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_outputs() const | IMP::kernel::ModelObject | |
| get_required_score_states() const | IMP::kernel::ModelObject | |
| get_score_accumulator(bool deriv) (defined in IMP::kernel::ScoringFunction) | IMP::kernel::ScoringFunction | protected |
| get_score_accumulator_if_below(bool deriv, double max) (defined in IMP::kernel::ScoringFunction) | IMP::kernel::ScoringFunction | protected |
| get_score_accumulator_if_good(bool deriv) (defined in IMP::kernel::ScoringFunction) | IMP::kernel::ScoringFunction | protected |
| get_type_name() const (defined in IMP::core::IncrementalScoringFunction) | IMP::core::IncrementalScoringFunction | virtual |
| get_version_info() const | IMP::core::IncrementalScoringFunction | virtual |
| handle_set_has_required_score_states(bool) | IMP::core::IncrementalScoringFunction | virtual |
| IncrementalScoringFunction(const kernel::ParticlesTemp &to_move, const kernel::RestraintsTemp &rs, double weight=1.0, double max=NO_MAX, std::string name="IncrementalScoringFunction%1%") | IMP::core::IncrementalScoringFunction | |
| ModelObject(kernel::Model *m, std::string name) (defined in IMP::kernel::ModelObject) | IMP::kernel::ModelObject | |
| ModelObject(std::string name) | IMP::kernel::ModelObject | |
| NonCopyable() (defined in IMP::base::NonCopyable) | IMP::base::NonCopyable | protected |
| Object(std::string name) | IMP::base::Object | protected |
| Object() | IMP::base::Object | protected |
| reset_moved_particles() | IMP::core::IncrementalScoringFunction | |
| ScoreIsGoodPair typedef (defined in IMP::kernel::ScoringFunction) | IMP::kernel::ScoringFunction | |
| ScoringFunction(kernel::Model *m, std::string name) (defined in IMP::kernel::ScoringFunction) | IMP::kernel::ScoringFunction | |
| set_check_level(CheckLevel l) | IMP::base::Object | |
| set_has_dependencies(bool tf) | IMP::kernel::ModelObject | |
| set_has_required_score_states(bool tf) | IMP::kernel::ModelObject | |
| set_log_level(LogLevel l) | IMP::base::Object | |
| set_model(kernel::Model *m) | IMP::kernel::ModelObject | virtual |
| set_moved_particles(const kernel::ParticleIndexes &p) | IMP::core::IncrementalScoringFunction | |
| set_name(std::string name) (defined in IMP::base::Object) | IMP::base::Object | |
| set_was_used(bool tf) const | IMP::base::Object | |
| show(std::ostream &out=std::cout) const (defined in IMP::base::Object) | IMP::base::Object | |
| ~ModelObject() (defined in IMP::kernel::ModelObject) | IMP::kernel::ModelObject | |
