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IMP
2.1.0
The Integrative Modeling Platform
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IMP
2.1.0
The Integrative Modeling Platform
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This is the complete list of members for IMP::atom::Fragment, including all inherited members.
| add_child(Hierarchy o) | IMP::atom::Hierarchy | |
| add_child(Hierarchy h) const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| add_child_at(Hierarchy h, unsigned int pos) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| clear_children() (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| decorate_particle(::IMP::kernel::Particle *p) | IMP::atom::Fragment | static |
| IMP::atom::Hierarchy::decorate_particle(::IMP::kernel::Particle *p, const HierarchyTraits &tr=get_default_traits()) | IMP::core::Hierarchy | static |
| Decorator(kernel::Model *m, ParticleIndex pi) (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | protected |
| Decorator() (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | protected |
| Decorator(ParticleAdaptor p) (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | explicitprotected |
| Decorator(Particle *p) | IMP::kernel::Decorator | |
| Decorator() | IMP::kernel::Decorator | |
| DecoratorTraits typedef (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| Fragment() (defined in IMP::atom::Fragment) | IMP::atom::Fragment | |
| Fragment(::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) (defined in IMP::atom::Fragment) | IMP::atom::Fragment | |
| Fragment(const IMP::kernel::ParticleAdaptor &d) (defined in IMP::atom::Fragment) | IMP::atom::Fragment | explicit |
| get_as_atom() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_as_chain() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_as_domain() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_as_fragment() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_as_mass() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_as_molecule() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_as_residue() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_as_xyz() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_as_xyzr() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| get_child(unsigned int i) const | IMP::atom::Hierarchy | |
| get_child_index(unsigned int i) const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| get_child_index() const | IMP::core::Hierarchy | |
| get_children() const | IMP::atom::Hierarchy | |
| get_children() const | IMP::atom::Hierarchy | |
| get_contains_residue(int rindex) const | IMP::atom::Fragment | |
| get_decorator_traits() const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| get_default_decorator_traits() (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| get_default_traits() | IMP::core::Hierarchy | static |
| get_is_setup(kernel::Model *m, kernel::ParticleIndex pi) (defined in IMP::atom::Fragment) | IMP::atom::Fragment | static |
| get_is_setup(const IMP::kernel::ParticleAdaptor &p) (defined in IMP::atom::Fragment) | IMP::atom::Fragment | static |
| get_is_setup(const IMP::kernel::ParticleAdaptor &p, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| IMP::core::Hierarchy::get_is_setup(kernel::Model *, kernel::ParticleIndex, HierarchyTraits=Hierarchy::get_default_traits()) | IMP::core::Hierarchy | static |
| IMP::kernel::Decorator::get_is_setup(Particle *p) | IMP::kernel::Decorator | static |
| get_is_valid(bool print_info) const | IMP::atom::Hierarchy | |
| get_model() const | IMP::kernel::Decorator | |
| get_number_of_children() const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| get_parent() const | IMP::atom::Hierarchy | |
| get_particle() const | IMP::kernel::Decorator | |
| get_particle_index() const (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | |
| get_residue_index_ranges() const | IMP::atom::Fragment | |
| get_residue_indexes() const (defined in IMP::atom::Fragment) | IMP::atom::Fragment | |
| get_traits() | IMP::atom::Hierarchy | static |
| Hierarchy(kernel::Model *m, kernel::ParticleIndex pi) (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| Hierarchy(kernel::ParticleAdaptor pi) (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
| Hierarchy() | IMP::atom::Hierarchy | |
| Hierarchy(IMP::core::Hierarchy h) | IMP::atom::Hierarchy | explicit |
| Hierarchy(::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| Hierarchy(const IMP::kernel::ParticleAdaptor &d, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | explicit |
| particle_is_instance(::IMP::kernel::Particle *p) | IMP::atom::Fragment | static |
| particle_is_instance(IMP::kernel::Model *m, IMP::kernel::ParticleIndex pi) | IMP::atom::Fragment | static |
| IMP::atom::Hierarchy::particle_is_instance(::IMP::kernel::Particle *p, const HierarchyTraits &tr=get_default_traits()) | IMP::core::Hierarchy | static |
| IMP::atom::Hierarchy::particle_is_instance(IMP::kernel::Model *m, IMP::kernel::ParticleIndex pi, const HierarchyTraits &tr=get_default_traits()) | IMP::core::Hierarchy | static |
| remove_child(unsigned int i) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| remove_child(Hierarchy h) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
| set_residue_indexes(Ints o) | IMP::atom::Fragment | |
| setup_particle(kernel::Model *m, ParticleIndex pi) | IMP::atom::Fragment | static |
| setup_particle(IMP::kernel::ParticleAdaptor decorator) (defined in IMP::atom::Fragment) | IMP::atom::Fragment | static |
| setup_particle(kernel::Model *m, ParticleIndex pi, Fragment other) | IMP::atom::Fragment | static |
| setup_particle(IMP::kernel::ParticleAdaptor decorator, Fragment other) (defined in IMP::atom::Fragment) | IMP::atom::Fragment | static |
| setup_particle(kernel::Model *m, ParticleIndex pi, Ints residue_indexes) | IMP::atom::Fragment | static |
| setup_particle(IMP::kernel::ParticleAdaptor decorator, Ints residue_indexes) (defined in IMP::atom::Fragment) | IMP::atom::Fragment | static |
| IMP::atom::Hierarchy::setup_particle(kernel::Model *m, kernel::ParticleIndex pi, kernel::ParticleIndexesAdaptor children=kernel::ParticleIndexesAdaptor()) | IMP::atom::Hierarchy | static |
| IMP::core::Hierarchy::setup_particle(kernel::Model *m, ParticleIndex pi, DecoratorTraits tr=get_default_decorator_traits()) | IMP::core::Hierarchy | static |
| setup_particle(IMP::kernel::ParticleAdaptor d, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| IMP::core::Hierarchy::setup_particle(kernel::Model *m, ParticleIndex pi, kernel::ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits()) | IMP::core::Hierarchy | static |
| setup_particle(IMP::kernel::ParticleAdaptor d, kernel::ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| setup_particle(kernel::Model *m, ParticleIndex pi, kernel::ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| setup_particle(IMP::kernel::ParticleAdaptor d, kernel::ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
| show(std::ostream &out=std::cout) const (defined in IMP::atom::Fragment) | IMP::atom::Fragment | |
| Value() (defined in IMP::base::Value) | IMP::base::Value | protected |