IMP  2.1.0
The Integrative Modeling Platform
IMP::atom::Fragment Member List

This is the complete list of members for IMP::atom::Fragment, including all inherited members.

add_child(Hierarchy o)IMP::atom::Hierarchy
add_child(Hierarchy h) const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
add_child_at(Hierarchy h, unsigned int pos) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
clear_children() (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
decorate_particle(::IMP::kernel::Particle *p)IMP::atom::Fragmentstatic
IMP::atom::Hierarchy::decorate_particle(::IMP::kernel::Particle *p, const HierarchyTraits &tr=get_default_traits())IMP::core::Hierarchystatic
Decorator(kernel::Model *m, ParticleIndex pi) (defined in IMP::kernel::Decorator)IMP::kernel::Decoratorprotected
Decorator() (defined in IMP::kernel::Decorator)IMP::kernel::Decoratorprotected
Decorator(ParticleAdaptor p) (defined in IMP::kernel::Decorator)IMP::kernel::Decoratorexplicitprotected
Decorator(Particle *p)IMP::kernel::Decorator
Decorator()IMP::kernel::Decorator
DecoratorTraits typedef (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
Fragment() (defined in IMP::atom::Fragment)IMP::atom::Fragment
Fragment(::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id) (defined in IMP::atom::Fragment)IMP::atom::Fragment
Fragment(const IMP::kernel::ParticleAdaptor &d) (defined in IMP::atom::Fragment)IMP::atom::Fragmentexplicit
get_as_atom() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_as_chain() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_as_domain() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_as_fragment() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_as_mass() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_as_molecule() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_as_residue() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_as_xyz() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_as_xyzr() const (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
get_child(unsigned int i) const IMP::atom::Hierarchy
get_child_index(unsigned int i) const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_child_index() const IMP::core::Hierarchy
get_children() const IMP::atom::Hierarchy
get_children() const IMP::atom::Hierarchy
get_contains_residue(int rindex) const IMP::atom::Fragment
get_decorator_traits() const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_default_decorator_traits() (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
get_default_traits()IMP::core::Hierarchystatic
get_is_setup(kernel::Model *m, kernel::ParticleIndex pi) (defined in IMP::atom::Fragment)IMP::atom::Fragmentstatic
get_is_setup(const IMP::kernel::ParticleAdaptor &p) (defined in IMP::atom::Fragment)IMP::atom::Fragmentstatic
get_is_setup(const IMP::kernel::ParticleAdaptor &p, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
IMP::core::Hierarchy::get_is_setup(kernel::Model *, kernel::ParticleIndex, HierarchyTraits=Hierarchy::get_default_traits())IMP::core::Hierarchystatic
IMP::kernel::Decorator::get_is_setup(Particle *p)IMP::kernel::Decoratorstatic
get_is_valid(bool print_info) const IMP::atom::Hierarchy
get_model() const IMP::kernel::Decorator
get_number_of_children() const (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
get_parent() const IMP::atom::Hierarchy
get_particle() const IMP::kernel::Decorator
get_particle_index() const (defined in IMP::kernel::Decorator)IMP::kernel::Decorator
get_residue_index_ranges() const IMP::atom::Fragment
get_residue_indexes() const (defined in IMP::atom::Fragment)IMP::atom::Fragment
get_traits()IMP::atom::Hierarchystatic
Hierarchy(kernel::Model *m, kernel::ParticleIndex pi) (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
Hierarchy(kernel::ParticleAdaptor pi) (defined in IMP::atom::Hierarchy)IMP::atom::Hierarchy
Hierarchy()IMP::atom::Hierarchy
Hierarchy(IMP::core::Hierarchy h)IMP::atom::Hierarchyexplicit
Hierarchy(::IMP::kernel::Model *m,::IMP::kernel::ParticleIndex id, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
Hierarchy(const IMP::kernel::ParticleAdaptor &d, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchyexplicit
particle_is_instance(::IMP::kernel::Particle *p)IMP::atom::Fragmentstatic
particle_is_instance(IMP::kernel::Model *m, IMP::kernel::ParticleIndex pi)IMP::atom::Fragmentstatic
IMP::atom::Hierarchy::particle_is_instance(::IMP::kernel::Particle *p, const HierarchyTraits &tr=get_default_traits())IMP::core::Hierarchystatic
IMP::atom::Hierarchy::particle_is_instance(IMP::kernel::Model *m, IMP::kernel::ParticleIndex pi, const HierarchyTraits &tr=get_default_traits())IMP::core::Hierarchystatic
remove_child(unsigned int i) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
remove_child(Hierarchy h) (defined in IMP::core::Hierarchy)IMP::core::Hierarchy
set_residue_indexes(Ints o)IMP::atom::Fragment
setup_particle(kernel::Model *m, ParticleIndex pi)IMP::atom::Fragmentstatic
setup_particle(IMP::kernel::ParticleAdaptor decorator) (defined in IMP::atom::Fragment)IMP::atom::Fragmentstatic
setup_particle(kernel::Model *m, ParticleIndex pi, Fragment other)IMP::atom::Fragmentstatic
setup_particle(IMP::kernel::ParticleAdaptor decorator, Fragment other) (defined in IMP::atom::Fragment)IMP::atom::Fragmentstatic
setup_particle(kernel::Model *m, ParticleIndex pi, Ints residue_indexes)IMP::atom::Fragmentstatic
setup_particle(IMP::kernel::ParticleAdaptor decorator, Ints residue_indexes) (defined in IMP::atom::Fragment)IMP::atom::Fragmentstatic
IMP::atom::Hierarchy::setup_particle(kernel::Model *m, kernel::ParticleIndex pi, kernel::ParticleIndexesAdaptor children=kernel::ParticleIndexesAdaptor())IMP::atom::Hierarchystatic
IMP::core::Hierarchy::setup_particle(kernel::Model *m, ParticleIndex pi, DecoratorTraits tr=get_default_decorator_traits())IMP::core::Hierarchystatic
setup_particle(IMP::kernel::ParticleAdaptor d, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
IMP::core::Hierarchy::setup_particle(kernel::Model *m, ParticleIndex pi, kernel::ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits())IMP::core::Hierarchystatic
setup_particle(IMP::kernel::ParticleAdaptor d, kernel::ParticleIndexes children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
setup_particle(kernel::Model *m, ParticleIndex pi, kernel::ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
setup_particle(IMP::kernel::ParticleAdaptor d, kernel::ParticlesTemp children, DecoratorTraits tr=get_default_decorator_traits()) (defined in IMP::core::Hierarchy)IMP::core::Hierarchystatic
show(std::ostream &out=std::cout) const (defined in IMP::atom::Fragment)IMP::atom::Fragment
Value() (defined in IMP::base::Value)IMP::base::Valueprotected