IMP  2.1.0
The Integrative Modeling Platform
QuadraticClosePairsFinder.h
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1 /**
2  * \file IMP/core/QuadraticClosePairsFinder.h
3  * \brief Test all pairs of particles to find close pairs.
4  *
5  * Copyright 2007-2013 IMP Inventors. All rights reserved.
6  */
7 
8 #ifndef IMPCORE_QUADRATIC_CLOSE_PAIRS_FINDER_H
9 #define IMPCORE_QUADRATIC_CLOSE_PAIRS_FINDER_H
10 
11 #include "ClosePairsFinder.h"
13 #include <IMP/core/core_config.h>
14 
15 IMPCORE_BEGIN_NAMESPACE
16 
17 //! Find all nearby pairs by testing all pairs
18 /** \see ClosePairsScoreState
19  */
20 class IMPCOREEXPORT QuadraticClosePairsFinder : public ClosePairsFinder {
21  public:
23  bool get_are_close(kernel::Particle *a, kernel::Particle *b) const {
24  return get_are_close(a->get_model(), a->get_index(), b->get_index());
25  }
26  bool get_are_close(kernel::Model *m, kernel::ParticleIndex a,
27  kernel::ParticleIndex b) const;
28 #ifndef SWIG
30 #else
32  const kernel::ParticlesTemp &pc) const;
34  const kernel::ParticlesTemp &pca, const kernel::ParticlesTemp &pcb) const;
35 #endif
36  virtual IntPairs get_close_pairs(const algebra::BoundingBox3Ds &bbs) const
37  IMP_OVERRIDE;
39  const algebra::BoundingBox3Ds &bbs) const
40  IMP_OVERRIDE;
42  kernel::Model *m, const kernel::ParticleIndexes &pc) const IMP_OVERRIDE;
45  const kernel::ParticleIndexes &pcb) const IMP_OVERRIDE;
47  kernel::Model *m, const kernel::ParticleIndexes &pis) const IMP_OVERRIDE;
48 
50 };
51 
52 IMPCORE_END_NAMESPACE
53 
54 #endif /* IMPCORE_QUADRATIC_CLOSE_PAIRS_FINDER_H */
A base class for algorithms to find spatial proximities.
virtual ModelObjectsTemp do_get_inputs(kernel::Model *m, const ParticleIndexes &pis) const
#define IMP_OBJECT_METHODS(Name)
Define the basic things needed by any Object.
Class to handle individual model particles.
kernel::ParticlePairsTemp get_close_pairs(const kernel::ParticlesTemp &pc) const
Various important macros for implementing decorators.
A base class for algorithms to detect proximities.
Find all nearby pairs by testing all pairs.
Class for storing model, its restraints, constraints, and particles.