IMP  2.0.1
The Integrative Modeling Platform
IMP::isd::Covariance1DFunction Member List

This is the complete list of members for IMP::isd::Covariance1DFunction, including all inherited members.

add_to_derivatives(const Floats &x1, const Floats &x2, DerivativeAccumulator &accum) const IMP::isd::Covariance1DFunctionvirtual
add_to_particle_derivative(unsigned particle_no, double value, DerivativeAccumulator &accum) const IMP::isd::Covariance1DFunctionvirtual
BivariateFunction(std::string str) (defined in IMP::isd::BivariateFunction)IMP::isd::BivariateFunction
clear_caches()IMP::base::Objectvirtual
Covariance1DFunction(Particle *tau, Particle *ilambda, double alpha=2.0, double jitter=0.0, double cutoff=1e-7) (defined in IMP::isd::Covariance1DFunction)IMP::isd::Covariance1DFunction
get_derivative_matrix(unsigned particle_no, const FloatsList &xlist) const IMP::isd::Covariance1DFunctionvirtual
get_derivative_matrix(unsigned particle_no, const FloatsList &xlist, bool) const (defined in IMP::isd::Covariance1DFunction)IMP::isd::Covariance1DFunctionvirtual
get_input_containers() const (defined in IMP::isd::Covariance1DFunction)IMP::isd::Covariance1DFunctionvirtual
get_input_particles() const IMP::isd::Covariance1DFunctionvirtual
get_name() const (defined in IMP::base::Object)IMP::base::Object
get_ndims_x1() const IMP::isd::Covariance1DFunctionvirtual
get_ndims_x2() const (defined in IMP::isd::Covariance1DFunction)IMP::isd::Covariance1DFunctionvirtual
get_ndims_y() const IMP::isd::Covariance1DFunctionvirtual
get_number_of_optimized_particles() const IMP::isd::Covariance1DFunctionvirtual
get_number_of_particles() const IMP::isd::Covariance1DFunctionvirtual
get_particle_is_optimized(unsigned particle_no) const IMP::isd::Covariance1DFunctionvirtual
get_second_derivative_matrix(unsigned particle_a, unsigned particle_b, const FloatsList &xlist) const IMP::isd::Covariance1DFunctionvirtual
get_second_derivative_matrix(unsigned particle_a, unsigned particle_b, const FloatsList &xlist, bool) const (defined in IMP::isd::Covariance1DFunction)IMP::isd::Covariance1DFunctionvirtual
get_version_info() const =0IMP::base::Objectpure virtual
has_changed() const IMP::isd::Covariance1DFunctionvirtual
NonCopyable() (defined in IMP::base::NonCopyable)IMP::base::NonCopyableprotected
Object(std::string name)IMP::base::Objectprotected
ObjectsTemp typedefIMP::base::Objectrelated
operator()(const Floats &x1, const Floats &x2) const IMP::isd::Covariance1DFunctionvirtual
operator()(const IMP::FloatsList &xlist) const IMP::isd::Covariance1DFunctionvirtual
operator()(const IMP::FloatsList &xlist, bool) const IMP::isd::Covariance1DFunctionvirtual
set_check_level(CheckLevel l)IMP::base::Object
set_log_level(LogLevel l)IMP::base::Object
set_name(std::string name) (defined in IMP::base::Object)IMP::base::Object
set_was_used(bool tf) const IMP::base::Object
show(std::ostream &out=std::cout) const (defined in IMP::base::Object)IMP::base::Object
update()IMP::isd::Covariance1DFunctionvirtual