add_triplet_container(TripletContainer *obj) (defined in IMP::container::TripletContainerSet) | IMP::container::TripletContainerSet | |
add_triplet_containers(const TripletContainers &objs) (defined in IMP::container::TripletContainerSet) | IMP::container::TripletContainerSet | |
after_evaluate(DerivativeAccumulator *accpt) | IMP::kernel::ScoreState | |
apply(const TripletModifier *sm) const | IMP::kernel::TripletContainer | |
apply_generic(const M *m) const | IMP::container::TripletContainerSet | |
IMP::kernel::TripletContainer::apply_generic(const TripletModifier *m) const | IMP::kernel::TripletContainer | |
before_evaluate() | IMP::kernel::ScoreState | |
clear_caches() | IMP::base::Object | virtual |
clear_triplet_containers() (defined in IMP::container::TripletContainerSet) | IMP::container::TripletContainerSet | |
ContainedIndexType typedef (defined in IMP::kernel::TripletContainer) | IMP::kernel::TripletContainer | |
ContainedIndexTypes typedef (defined in IMP::kernel::TripletContainer) | IMP::kernel::TripletContainer | |
ContainedType typedef (defined in IMP::kernel::TripletContainer) | IMP::kernel::TripletContainer | |
ContainedTypes typedef (defined in IMP::kernel::TripletContainer) | IMP::kernel::TripletContainer | |
Container(Model *m, std::string name="Container %1%") (defined in IMP::kernel::Container) | IMP::kernel::Container | protected |
ContainersTemp typedef | IMP::kernel::Container | related |
do_after_evaluate(DerivativeAccumulator *accpt) | IMP::kernel::Container | virtual |
do_apply(const TripletModifier *sm) const =0 (defined in IMP::kernel::TripletContainer) | IMP::kernel::TripletContainer | protectedpure virtual |
do_before_evaluate()=0 (defined in IMP::kernel::ScoreState) | IMP::kernel::ScoreState | protectedpure virtual |
do_get_inputs() const =0 | IMP::kernel::ModelObject | protectedpure virtual |
do_get_interactions() const | IMP::kernel::ModelObject | protectedvirtual |
do_get_outputs() const | IMP::kernel::Container | virtual |
do_get_provides_access() const (defined in IMP::kernel::TripletContainer) | IMP::kernel::TripletContainer | protectedvirtual |
do_show(std::ostream &out) const (defined in IMP::container::TripletContainerSet) | IMP::container::TripletContainerSet | virtual |
do_update_dependencies() | IMP::kernel::ScoreState | protectedvirtual |
get_all_possible_indexes() const | IMP::container::TripletContainerSet | virtual |
get_all_possible_particles() const | IMP::kernel::Container | |
get_contains_particle_triplet(ParticleTriplet v) const | IMP::kernel::TripletContainer | |
get_has_triplet_containers() (defined in IMP::container::TripletContainerSet) | IMP::container::TripletContainerSet | |
get_indexes() const =0 | IMP::kernel::TripletContainer | pure virtual |
get_input_containers() const | IMP::kernel::ScoreState | |
get_input_particles() const | IMP::kernel::ScoreState | |
get_inputs() const | IMP::kernel::ModelObject | |
get_interactions() const | IMP::kernel::ModelObject | |
get_is_changed() const | IMP::kernel::Container | |
get_is_decomposable() const | IMP::kernel::Container | virtual |
get_model() const (defined in IMP::kernel::ModelObject) | IMP::kernel::ModelObject | |
get_name() const (defined in IMP::base::Object) | IMP::base::Object | |
get_number_of_particle_triplets() const | IMP::kernel::TripletContainer | |
get_number_of_triplet_containers() const (defined in IMP::container::TripletContainerSet) | IMP::container::TripletContainerSet | |
get_output_containers() const | IMP::kernel::ScoreState | |
get_output_particles() const | IMP::kernel::ScoreState | |
get_outputs() const | IMP::kernel::ModelObject | |
get_particle_triplet(unsigned int i) const | IMP::kernel::TripletContainer | |
get_particle_triplets() const | IMP::kernel::TripletContainer | |
get_range_indexes() const =0 | IMP::kernel::TripletContainer | pure virtual |
get_triplet_container(unsigned int i) const (defined in IMP::container::TripletContainerSet) | IMP::container::TripletContainerSet | |
get_triplet_containers() const (defined in IMP::container::TripletContainerSet) | IMP::container::TripletContainerSet | |
get_version_info() const =0 | IMP::base::Object | pure virtual |
ModelObject(Model *m, std::string name) (defined in IMP::kernel::ModelObject) | IMP::kernel::ModelObject | |
ModelObjectsTemp typedef | IMP::kernel::ModelObject | related |
NonCopyable() (defined in IMP::base::NonCopyable) | IMP::base::NonCopyable | protected |
Object(std::string name) | IMP::base::Object | protected |
ObjectsTemp typedef | IMP::base::Object | related |
remove_triplet_container(TripletContainer *d) (defined in IMP::container::TripletContainerSet) | IMP::container::TripletContainerSet | |
remove_triplet_containers(const TripletContainers &d) (defined in IMP::container::TripletContainerSet) | IMP::container::TripletContainerSet | |
reserve_triplet_containers(unsigned int sz) (defined in IMP::container::TripletContainerSet) | IMP::container::TripletContainerSet | |
ScoreState(Model *m, std::string name="ScoreState %1%") (defined in IMP::kernel::ScoreState) | IMP::kernel::ScoreState | |
ScoreStatesTemp typedef | IMP::kernel::ScoreState | related |
set_check_level(CheckLevel l) | IMP::base::Object | |
set_is_changed(bool tf) | IMP::kernel::Container | protected |
set_log_level(LogLevel l) | IMP::base::Object | |
set_name(std::string name) (defined in IMP::base::Object) | IMP::base::Object | |
set_triplet_containers(const TripletContainers &ps) (defined in IMP::container::TripletContainerSet) | IMP::container::TripletContainerSet | |
set_triplet_containers_order(const TripletContainers &objs) (defined in IMP::container::TripletContainerSet) | IMP::container::TripletContainerSet | |
set_was_used(bool tf) const | IMP::base::Object | |
show(std::ostream &out=std::cout) const (defined in IMP::base::Object) | IMP::base::Object | |
TripletContainer(Model *m, std::string name="TripletContainer %1%") (defined in IMP::kernel::TripletContainer) | IMP::kernel::TripletContainer | protected |
TripletContainerSet(Model *m, std::string name="TripletContainerSet %1%") | IMP::container::TripletContainerSet | |
TripletContainerSet(const TripletContainersTemp &pc, std::string name="TripletContainerSet %1%") (defined in IMP::container::TripletContainerSet) | IMP::container::TripletContainerSet | |
TripletContainersTemp typedef | IMP::kernel::TripletContainer | related |
update_dependencies() | IMP::kernel::ModelObject | protectedvirtual |