| after_evaluate(DerivativeAccumulator *accpt) | IMP::kernel::ScoreState | |
| apply(const PairModifier *sm) const | IMP::kernel::PairContainer | |
| apply_generic(const PairModifier *m) const | IMP::kernel::PairContainer | |
| before_evaluate() | IMP::kernel::ScoreState | |
| clear_caches() | IMP::base::Object | virtual |
| ContainedIndexType typedef (defined in IMP::kernel::PairContainer) | IMP::kernel::PairContainer | |
| ContainedIndexTypes typedef (defined in IMP::kernel::PairContainer) | IMP::kernel::PairContainer | |
| ContainedType typedef (defined in IMP::kernel::PairContainer) | IMP::kernel::PairContainer | |
| ContainedTypes typedef (defined in IMP::kernel::PairContainer) | IMP::kernel::PairContainer | |
| Container(Model *m, std::string name="Container %1%") (defined in IMP::kernel::Container) | IMP::kernel::Container | protected |
| ContainersTemp typedef | IMP::kernel::Container | related |
| do_after_evaluate(DerivativeAccumulator *accpt) | IMP::kernel::Container | virtual |
| do_apply(const PairModifier *sm) const =0 (defined in IMP::kernel::PairContainer) | IMP::kernel::PairContainer | protectedpure virtual |
| do_before_evaluate()=0 (defined in IMP::kernel::ScoreState) | IMP::kernel::ScoreState | protectedpure virtual |
| do_get_inputs() const =0 | IMP::kernel::ModelObject | protectedpure virtual |
| do_get_interactions() const | IMP::kernel::ModelObject | protectedvirtual |
| do_get_outputs() const | IMP::kernel::Container | virtual |
| do_get_provides_access() const (defined in IMP::kernel::PairContainer) | IMP::kernel::PairContainer | protectedvirtual |
| do_update_dependencies() | IMP::kernel::ScoreState | protectedvirtual |
| get_all_possible_indexes() const =0 | IMP::kernel::Container | pure virtual |
| get_all_possible_particles() const | IMP::kernel::Container | |
| get_contains_particle_pair(ParticlePair v) const | IMP::kernel::PairContainer | |
| get_indexes() const =0 | IMP::kernel::PairContainer | pure virtual |
| get_input_containers() const | IMP::kernel::ScoreState | |
| get_input_particles() const | IMP::kernel::ScoreState | |
| get_inputs() const | IMP::kernel::ModelObject | |
| get_interactions() const | IMP::kernel::ModelObject | |
| get_is_changed() const | IMP::kernel::Container | |
| get_is_decomposable() const | IMP::kernel::Container | virtual |
| get_model() const (defined in IMP::kernel::ModelObject) | IMP::kernel::ModelObject | |
| get_name() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_number_of_particle_pairs() const | IMP::kernel::PairContainer | |
| get_output_containers() const | IMP::kernel::ScoreState | |
| get_output_particles() const | IMP::kernel::ScoreState | |
| get_outputs() const | IMP::kernel::ModelObject | |
| get_particle_pair(unsigned int i) const | IMP::kernel::PairContainer | |
| get_particle_pairs() const | IMP::kernel::PairContainer | |
| get_range_indexes() const =0 | IMP::kernel::PairContainer | pure virtual |
| get_version_info() const =0 | IMP::base::Object | pure virtual |
| ListPairContainer(Model *m, const ParticleIndexPairs &contents, std::string name="ListPairContainer%1%") (defined in IMP::container::ListPairContainer) | IMP::container::ListPairContainer | |
| ListPairContainer(const ParticlePairsTemp &ps, std::string name="ListPairContainer%1%") (defined in IMP::container::ListPairContainer) | IMP::container::ListPairContainer | |
| ModelObject(Model *m, std::string name) (defined in IMP::kernel::ModelObject) | IMP::kernel::ModelObject | |
| ModelObjectsTemp typedef | IMP::kernel::ModelObject | related |
| NonCopyable() (defined in IMP::base::NonCopyable) | IMP::base::NonCopyable | protected |
| Object(std::string name) | IMP::base::Object | protected |
| ObjectsTemp typedef | IMP::base::Object | related |
| PairContainer(Model *m, std::string name="PairContainer %1%") (defined in IMP::kernel::PairContainer) | IMP::kernel::PairContainer | protected |
| PairContainersTemp typedef | IMP::kernel::PairContainer | related |
| ScoreState(Model *m, std::string name="ScoreState %1%") (defined in IMP::kernel::ScoreState) | IMP::kernel::ScoreState | |
| ScoreStatesTemp typedef | IMP::kernel::ScoreState | related |
| set_check_level(CheckLevel l) | IMP::base::Object | |
| set_is_changed(bool tf) | IMP::kernel::Container | protected |
| set_log_level(LogLevel l) | IMP::base::Object | |
| set_name(std::string name) (defined in IMP::base::Object) | IMP::base::Object | |
| set_particle_pairs(const ParticlePairsTemp &ps) (defined in IMP::container::ListPairContainer) | IMP::container::ListPairContainer | |
| set_particle_pairs(const ParticleIndexPairs &contents) (defined in IMP::container::ListPairContainer) | IMP::container::ListPairContainer | |
| set_was_used(bool tf) const | IMP::base::Object | |
| show(std::ostream &out=std::cout) const (defined in IMP::base::Object) | IMP::base::Object | |
| update_dependencies() | IMP::kernel::ModelObject | protectedvirtual |
