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IMP
2.0.1
The Integrative Modeling Platform
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This is the complete list of members for IMP::atom::Simulator, including all inherited members.
| add_optimizer_state(OptimizerState *obj) (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | |
| add_optimizer_states(const OptimizerStates &objs) (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | |
| add_particle(Particle *obj) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| add_particles(const Particles &objs) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| clear_caches() | IMP::base::Object | virtual |
| clear_optimizer_states() (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | |
| clear_particles() (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| clear_range_cache() | IMP::kernel::Optimizer | protected |
| do_optimize(unsigned int ns)=0 | IMP::kernel::Optimizer | protectedpure virtual |
| do_step(const ParticleIndexes &sc, double dt)=0 | IMP::atom::Simulator | protectedpure virtual |
| get_current_time() const | IMP::atom::Simulator | |
| get_derivative(FloatIndex fi) const (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | protected |
| get_has_optimizer_states() (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | |
| get_has_particles() (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_is_simulation_particle(ParticleIndex p) const =0 | IMP::atom::Simulator | protectedpure virtual |
| get_kt() const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_last_score() const | IMP::kernel::Optimizer | |
| get_last_time_step() const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_maximum_time_step() const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_model() const | IMP::kernel::Optimizer | |
| get_name() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_number_of_optimizer_states() const (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | |
| get_number_of_particles() const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_optimized_attributes() const (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | protected |
| get_optimizer_state(unsigned int i) const (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | |
| get_optimizer_states() const (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | |
| get_particle(unsigned int i) const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_particles() const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_scaled_derivative(FloatIndex fi) const (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | protected |
| get_scaled_value(FloatIndex fi) const (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | protected |
| get_scoring_function() const | IMP::kernel::Optimizer | |
| get_simulation_particle_indexes() const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_simulation_particles() const | IMP::atom::Simulator | |
| get_stop_on_good_score() const (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | |
| get_temperature() const (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| get_value(FloatIndex fi) const (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | protected |
| get_version_info() const =0 | IMP::base::Object | pure virtual |
| IMP_OPTIMIZER(Simulator) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| NonCopyable() (defined in IMP::base::NonCopyable) | IMP::base::NonCopyable | protected |
| Object(std::string name) | IMP::base::Object | protected |
| ObjectsTemp typedef | IMP::base::Object | related |
| optimize(unsigned int max_steps) | IMP::kernel::Optimizer | |
| Optimizer() (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | |
| Optimizer(Model *m, std::string name="Optimizer %1%") (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | |
| OptimizersTemp typedef | IMP::kernel::Optimizer | related |
| remove_optimizer_state(OptimizerState *d) (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | |
| remove_optimizer_states(const OptimizerStates &d) (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | |
| remove_particle(Particle *d) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| remove_particles(const Particles &d) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| reserve_optimizer_states(unsigned int sz) (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | |
| reserve_particles(unsigned int sz) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| set_check_level(CheckLevel l) | IMP::base::Object | |
| set_current_time(double ct) | IMP::atom::Simulator | related |
| set_log_level(LogLevel l) | IMP::base::Object | |
| set_maximum_time_step(double ts) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| set_model(Model *m) | IMP::kernel::Optimizer | |
| set_name(std::string name) (defined in IMP::base::Object) | IMP::base::Object | |
| set_optimizer_states(const OptimizerStates &ps) (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | |
| set_optimizer_states_order(const OptimizerStates &objs) (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | |
| set_particles(const Particles &ps) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| set_particles_order(const Particles &objs) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| set_scaled_value(FloatIndex fi, Float v) const (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | protected |
| set_scoring_function(ScoringFunctionAdaptor sf) | IMP::kernel::Optimizer | virtual |
| set_stop_on_good_score(bool tf) | IMP::kernel::Optimizer | |
| set_temperature(double d) (defined in IMP::atom::Simulator) | IMP::atom::Simulator | |
| set_value(FloatIndex fi, double v) const (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | protected |
| set_was_used(bool tf) const | IMP::base::Object | |
| setup(const ParticleIndexes &) | IMP::atom::Simulator | protectedvirtual |
| show(std::ostream &out=std::cout) const | IMP::kernel::Optimizer | virtual |
| simulate(double time_in_fs) | IMP::atom::Simulator | |
| Simulator(Model *m, std::string name="Simulator %1%") | IMP::atom::Simulator | |
| SimulatorsTemp typedef | IMP::atom::Simulator | related |
| update_states() const | IMP::kernel::Optimizer | protected |
| width(FloatKey k) const (defined in IMP::kernel::Optimizer) | IMP::kernel::Optimizer | protected |