| Argument typedef (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
| clear_caches() | IMP::base::Object | virtual |
| create_current_decomposition(Model *m, const ParticleIndexPair &vt) const | IMP::kernel::PairScore | |
| DistancePairScore(const DistanceScore &t0, std::string name="FunctorDistancePairScore %1%") (defined in IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >) | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | |
| DistanceScore typedef (defined in IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >) | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | |
| do_create_current_decomposition(Model *m, const ParticleIndexPair &vt) const | IMP::kernel::PairScore | protectedvirtual |
| do_get_inputs(Model *m, const ParticleIndexes &pis) const =0 | IMP::kernel::PairScore | protectedpure virtual |
| do_show(std::ostream &out) const (defined in IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > >) | IMP::score_functor::DistancePairScore< score_functor::Statistical< ProteinLigandType, BIPARTITE, INTERPOLATE, false > > | virtual |
| evaluate(const ParticlePair &vt, DerivativeAccumulator *da) const | IMP::kernel::PairScore | virtual |
| evaluate_if_good_index(Model *m, const ParticleIndexPair &vt, DerivativeAccumulator *da, double max) const | IMP::kernel::PairScore | virtual |
| evaluate_if_good_indexes(Model *m, const ParticleIndexPairs &o, DerivativeAccumulator *da, double max, unsigned int lower_bound, unsigned int upper_bound) const | IMP::kernel::PairScore | virtual |
| evaluate_index(Model *m, const ParticleIndexPair &vt, DerivativeAccumulator *da) const | IMP::kernel::PairScore | virtual |
| evaluate_indexes(Model *m, const ParticleIndexPairs &o, DerivativeAccumulator *da, unsigned int lower_bound, unsigned int upper_bound) const | IMP::kernel::PairScore | virtual |
| get_input_containers(Particle *p) const | IMP::kernel::PairScore | |
| get_input_particles(Particle *p) const | IMP::kernel::PairScore | |
| get_inputs(Model *m, const ParticleIndexes &pis) const | IMP::kernel::PairScore | |
| get_maximum_distance() const (defined in IMP::atom::ProteinLigandAtomPairScore) | IMP::atom::ProteinLigandAtomPairScore | |
| get_name() const (defined in IMP::base::Object) | IMP::base::Object | |
| get_version_info() const =0 | IMP::base::Object | pure virtual |
| IndexArgument typedef (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
| Modifier typedef (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
| NonCopyable() (defined in IMP::base::NonCopyable) | IMP::base::NonCopyable | protected |
| Object(std::string name) | IMP::base::Object | protected |
| ObjectsTemp typedef | IMP::base::Object | related |
| PairScore(std::string name="PairScore %1%") (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
| PairScoresTemp typedef | IMP::kernel::PairScore | related |
| PassArgument typedef (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
| PassIndexArgument typedef (defined in IMP::kernel::PairScore) | IMP::kernel::PairScore | |
| ProteinLigandAtomPairScore(double threshold=std::numeric_limits< double >::max()) (defined in IMP::atom::ProteinLigandAtomPairScore) | IMP::atom::ProteinLigandAtomPairScore | |
| ProteinLigandAtomPairScore(double threshold, base::TextInput data_file) (defined in IMP::atom::ProteinLigandAtomPairScore) | IMP::atom::ProteinLigandAtomPairScore | |
| ProteinLigandAtomPairScoresTemp typedef | IMP::atom::ProteinLigandAtomPairScore | related |
| set_check_level(CheckLevel l) | IMP::base::Object | |
| set_log_level(LogLevel l) | IMP::base::Object | |
| set_name(std::string name) (defined in IMP::base::Object) | IMP::base::Object | |
| set_was_used(bool tf) const | IMP::base::Object | |
| show(std::ostream &out=std::cout) const (defined in IMP::base::Object) | IMP::base::Object | |
| StatisticalPairScore(IntKey k, double threshold, base::TextInput data_file) | IMP::core::StatisticalPairScore< ProteinLigandType, true, false > | |
| StatisticalPairScore(IntKey k, double threshold, base::TextInput data_file, unsigned int shift) | IMP::core::StatisticalPairScore< ProteinLigandType, true, false > | |