IMP
2.0.1
The Integrative Modeling Platform
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This is the complete list of members for IMP::atom::Domain, including all inherited members.
add_child(Hierarchy o) | IMP::atom::Hierarchy | |
add_child(Hierarchy h) const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
add_child_at(Hierarchy h, unsigned int pos) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
clear_children() (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
create_clone(Hierarchy d) | IMP::atom::Hierarchy | related |
create_clone_one(Hierarchy d) | IMP::atom::Hierarchy | related |
create_excluded_volume_restraint(const Hierarchies &hs, double resolution=-1) | IMP::atom::Hierarchy | related |
create_fragment(const Hierarchies &ps) | IMP::atom::Hierarchy | related |
create_protein(Model *m, std::string name, double resolution, int number_of_residues, int first_residue_index=0, double volume=-1) | IMP::atom::Hierarchy | related |
decorate_particle(::IMP::kernel::Particle *p) (defined in IMP::atom::Domain) | IMP::atom::Domain | static |
IMP::atom::Hierarchy::decorate_particle(Particle *p) | IMP::atom::Hierarchy | static |
decorate_particle(::IMP::kernel::Particle *p, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
Decorator(Model *m, ParticleIndex pi) (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | protected |
Decorator(Particle *p) (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | protected |
Decorator() (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | protected |
Decorator(Particle *p) | IMP::kernel::Decorator | |
Decorator() | IMP::kernel::Decorator | |
DecoratorTraits typedef (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
DecoratorTraitsBase typedef (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
destroy(Hierarchy d) | IMP::atom::Hierarchy | related |
Domain() (defined in IMP::atom::Domain) | IMP::atom::Domain | |
Domain(Model *m, ParticleIndex id) (defined in IMP::atom::Domain) | IMP::atom::Domain | |
Domain(::IMP::kernel::Particle *p) (defined in IMP::atom::Domain) | IMP::atom::Domain | explicit |
find_breadth_first(HD h, F f) | IMP::core::Hierarchy | related |
gather(H h, F f, Out out) | IMP::core::Hierarchy | related |
gather_by_attribute(H h, K k, V v, Out out) | IMP::core::Hierarchy | related |
gather_by_attributes(H h, K0 k0, V0 v0, K1 k1, V1 v1, Out out) | IMP::core::Hierarchy | related |
gather_slice(H h, F f, Out out) | IMP::core::Hierarchy | related |
get_all_descendants(Hierarchy mhd) | IMP::core::Hierarchy | related |
get_as_atom() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
get_as_chain() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
get_as_domain() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
get_as_fragment() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
get_as_mass() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
get_as_molecule() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
get_as_residue() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
get_as_xyz() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
get_as_xyzr() const (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
get_atom(Residue rd, AtomType at) | IMP::atom::Hierarchy | related |
get_begin_index() const | IMP::atom::Domain | |
get_bounding_sphere(const Hierarchy &h) | IMP::atom::Hierarchy | related |
get_by_type(Hierarchy mhd, GetByType t) | IMP::atom::Hierarchy | related |
get_child(unsigned int i) const | IMP::atom::Hierarchy | |
get_child_index() const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
get_children() const | IMP::atom::Hierarchy | |
get_children() const | IMP::atom::Hierarchy | |
get_decorator_traits() const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
get_default_decorator_traits() (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | static |
get_default_traits() | IMP::core::Hierarchy | static |
get_end_index() const | IMP::atom::Domain | |
get_hierarchy_tree(Hierarchy h) | IMP::atom::Hierarchy | related |
get_index_range() const (defined in IMP::atom::Domain) | IMP::atom::Domain | |
get_internal(Hierarchy mhd) | IMP::core::Hierarchy | related |
get_is_valid(bool print_info) const | IMP::atom::Hierarchy | |
get_leaves(Hierarchy h) | IMP::atom::Hierarchy | related |
get_leaves(const Hierarchies &h) | IMP::atom::Hierarchy | related |
get_leaves(const Selection &h) | IMP::atom::Hierarchy | related |
IMP::core::Hierarchy::get_leaves(Hierarchy mhd) | IMP::core::Hierarchy | related |
get_model() const | IMP::kernel::Decorator | |
get_number_of_children() const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
get_parent() const | IMP::atom::Hierarchy | |
get_particle() const | IMP::kernel::Decorator | |
get_particle_index() const (defined in IMP::kernel::Decorator) | IMP::kernel::Decorator | |
get_residue(Atom d, bool nothrow=false) | IMP::atom::Hierarchy | related |
get_residue(Hierarchy mhd, unsigned int index) | IMP::atom::Hierarchy | related |
get_root(Hierarchy h) | IMP::atom::Hierarchy | related |
IMP::core::Hierarchy::get_root(Hierarchy h) | IMP::core::Hierarchy | related |
get_traits() | IMP::atom::Hierarchy | static |
get_traits() const (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
Hierarchy(Particle *p) (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | explicit |
Hierarchy(Model *m, ParticleIndex pi) (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | |
Hierarchy() | IMP::atom::Hierarchy | |
Hierarchy(IMP::core::Hierarchy h) | IMP::atom::Hierarchy | explicit |
Hierarchy(Model *m, ParticleIndex id, const HierarchyTraits &tr) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
Hierarchy(const HierarchyTraits &tr) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
Hierarchy(::IMP::kernel::Particle *p, const HierarchyTraits &tr=get_default_traits()) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | explicit |
particle_is_instance(Particle *p) (defined in IMP::atom::Domain) | IMP::atom::Domain | static |
particle_is_instance(Model *m, ParticleIndex p) (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | static |
IMP::core::Hierarchy::particle_is_instance(Particle *, HierarchyTraits=Hierarchy::get_default_traits()) | IMP::core::Hierarchy | static |
read_pdb(base::TextInput input, Model *model, PDBSelector *selector, bool select_first_model=true) (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | related |
remove_child(unsigned int i) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
remove_child(Hierarchy h) (defined in IMP::core::Hierarchy) | IMP::core::Hierarchy | |
set_index_range(IntRange ir) (defined in IMP::atom::Domain) | IMP::atom::Domain | |
setup_as_approximation(Hierarchy h) | IMP::atom::Hierarchy | related |
setup_particle(Particle *p, IntRange r) | IMP::atom::Domain | static |
setup_particle(Particle *p, Domain o) | IMP::atom::Domain | static |
setup_particle(Particle *p, const ParticlesTemp &children) (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | static |
IMP::atom::Hierarchy::setup_particle(Model *m, ParticleIndex pi, const ParticlesTemp &children=ParticlesTemp()) | IMP::atom::Hierarchy | static |
setup_particle(Particle *p) (defined in IMP::atom::Hierarchy) | IMP::atom::Hierarchy | static |
IMP::core::Hierarchy::setup_particle(Particle *p, HierarchyTraits traits=Hierarchy::get_default_traits()) | IMP::core::Hierarchy | static |
IMP::core::Hierarchy::setup_particle(Particle *p, const Particles &children, HierarchyTraits traits=Hierarchy::get_default_traits()) | IMP::core::Hierarchy | static |
show(std::ostream &out=std::cout) const (defined in IMP::atom::Domain) | IMP::atom::Domain | |
IMP::atom::Hierarchy::show(Hierarchy h, std::ostream &out=std::cout) | IMP::atom::Hierarchy | related |
IMP::core::Hierarchy::show(Hierarchy h, std::ostream &out=std::cout) | IMP::core::Hierarchy | related |
Value() (defined in IMP::base::Value) | IMP::base::Value | protected |
visit_breadth_first(HD d, F f) | IMP::core::Hierarchy | related |
visit_breadth_first_with_data(HD d, F f, typename F::result_type i) | IMP::core::Hierarchy | related |
visit_depth_first(HD d, F f) | IMP::core::Hierarchy | related |
visit_depth_first_with_data(HD d, F f, typename F::result_type i) | IMP::core::Hierarchy | related |
~Domain() (defined in IMP::atom::Domain) | IMP::atom::Domain | virtual |