IMP::atom::CHARMMPatch Member List

This is the complete list of members for IMP::atom::CHARMMPatch, including all inherited members.

add_angle(const CHARMMAngle &bond) (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
add_atom(const CHARMMAtomTopology &atom) (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
add_bond(const CHARMMBond &bond) (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
add_dihedral(const CHARMMDihedral &bond) (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
add_improper(const CHARMMDihedral &bond) (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
add_internal_coordinate(const CHARMMInternalCoordinate &ic) (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
add_removed_atom(std::string name) (defined in IMP::atom::CHARMMPatch)	IMP::atom::CHARMMPatch
angles_ (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase	protected
apply(CHARMMResidueTopology *res) const	IMP::atom::CHARMMPatch
apply(CHARMMResidueTopology *res1, CHARMMResidueTopology *res2) const	IMP::atom::CHARMMPatch
atoms_ (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase	protected
bonds_ (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase	protected
CHARMMPatch(std::string type)	IMP::atom::CHARMMPatch
CHARMMPatchesTemp typedef	IMP::atom::CHARMMPatch	related
CHARMMResidueTopologyBase(std::string type) (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase	protected
CHARMMResidueTopologyBasesTemp typedef	IMP::atom::CHARMMResidueTopologyBase	related
clear_caches()	IMP::base::Object	virtual
dihedrals_ (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase	protected
do_show(std::ostream &out) const (defined in IMP::atom::CHARMMPatch)	IMP::atom::CHARMMPatch	virtual
get_angle(unsigned int index) const (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
get_atom(unsigned int i) const (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
get_atom(AtomType type) const (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
get_atom(std::string name) const (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
get_bond(unsigned int index) const (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
get_dihedral(unsigned int index) const (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
get_improper(unsigned int index) const (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
get_internal_coordinate(unsigned int index) const (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
get_name() const (defined in IMP::base::Object)	IMP::base::Object
get_number_of_angles() const (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
get_number_of_atoms() const (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
get_number_of_bonds() const (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
get_number_of_dihedrals() const (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
get_number_of_impropers() const (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
get_number_of_internal_coordinates() const (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
get_number_of_removed_atoms() const (defined in IMP::atom::CHARMMPatch)	IMP::atom::CHARMMPatch
get_removed_atom(unsigned int i) const (defined in IMP::atom::CHARMMPatch)	IMP::atom::CHARMMPatch
get_type() const (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase
get_version_info() const =0	IMP::base::Object	pure virtual
impropers_ (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase	protected
internal_coordinates_ (defined in IMP::atom::CHARMMResidueTopologyBase)	IMP::atom::CHARMMResidueTopologyBase	protected
NonCopyable() (defined in IMP::base::NonCopyable)	IMP::base::NonCopyable	protected
Object(std::string name)	IMP::base::Object	protected
ObjectsTemp typedef	IMP::base::Object	related
set_check_level(CheckLevel l)	IMP::base::Object
set_log_level(LogLevel l)	IMP::base::Object
set_name(std::string name) (defined in IMP::base::Object)	IMP::base::Object
set_was_used(bool tf) const	IMP::base::Object
show(std::ostream &out=std::cout) const (defined in IMP::base::Object)	IMP::base::Object