IMP
2.0.1
The Integrative Modeling Platform
Main Page
Related Pages
Modules
Namespaces
Classes
Files
Examples
Class List
Class Index
Class Hierarchy
Class Members
IMP
IMP Documentation
Application Index
Argument Index
Class Examples
Modeling of GroEL with cnmultifit
Modeling of 3sfd with EMageFit
EMageFit protocol
EMageFit scripts and tools
Factory Index
Determination of a Nup133 structure with FoXS
Function Examples
Example design discussion
Developer Guide
Change History
Installation
Introduction
Mailing lists
Multithreaded evaluation using OpenMP
Integrative docking utility programs
Docking of PCSK9 with idock
Dependencies between objects
Module Index
Modeling of 3sfd with multifit
Deprecated List
Modules
Namespaces
Classes
Class List
IMP
algebra
atom
AllMol2Selector
AllPDBSelector
AndPDBSelector
Angle
AngleSingletonScore
Atom
ATOMPDBSelector
AtomType
BerendsenThermostatOptimizerState
Bond
Bonded
BondedPairFilter
BondEndpointsRefiner
BondGeometry
BondGraph
BondPairContainer
BondsGeometry
BondSingletonScore
BrownianDynamics
CAlphaPDBSelector
CBetaPDBSelector
Chain
ChainPDBSelector
Charged
CHARMMAtom
CHARMMAtomTopology
CHARMMBondEndpoint
CHARMMBondParameters
CHARMMConnection
CHARMMDihedralParameters
CHARMMIdealResidueTopology
CHARMMInternalCoordinate
CHARMMParameters
CHARMMPatch
CHARMMResidueTopology
CHARMMResidueTopologyBase
CHARMMSegmentTopology
CHARMMStereochemistryRestraint
CHARMMTopology
Copy
CoulombPairScore
CoverBond
CPDBSelector
Diffusion
Dihedral
DihedralSingletonScore
Domain
DopePairScore
ElementTable
ForceFieldParameters
ForceSwitch
Fragment
HierarchiesGeometry
Hierarchy
HierarchyGeometry
HydrogenPDBSelector
ImproperSingletonScore
LangevinThermostatOptimizerState
LennardJones
LennardJonesPairScore
Mass
Mol2Selector
MolecularDynamics
Molecule
NonAlternativePDBSelector
NonHydrogenMol2Selector
NonWaterNonHydrogenPDBSelector
NonWaterPDBSelector
NotPDBSelector
NPDBSelector
OrPDBSelector
PDBSelector
PPDBSelector
ProteinLigandAtomPairScore
ProteinLigandRestraint
RemoveRigidMotionOptimizerState
RemoveTranslationOptimizerState
Residue
ResidueType
RigidBodyDiffusion
RMSDCalculator
SameResiduePairFilter
SecondaryStructureResidue
Selection
SelectionGeometry
Simulator
SmoothingFunction
StereochemistryPairFilter
VelocityScalingOptimizerState
WaterPDBSelector
WritePDBOptimizerState
base
benchmark
cgal
cnmultifit
container
core
display
domino
em
em2d
example
gsl
isd
kernel
kmeans
misc
modeller
multifit
parallel
pepdock
restrainer
rmf
rotamer
saxs
score_functor
scratch
statistics
system
test
write_a_metric
Class Index
Class Hierarchy
Class Members
Files
Examples
IMP::atom::BondsGeometry Member List
This is the complete list of members for
IMP::atom::BondsGeometry
, including all inherited members.
BondsGeometry
(SingletonContainer *sc) (defined in
IMP::atom::BondsGeometry
)
IMP::atom::BondsGeometry
clear_caches
()
IMP::base::Object
virtual
GeometriesTemp
typedef
IMP::display::Geometry
related
Geometry
(std::string name) (defined in
IMP::display::Geometry
)
IMP::display::Geometry
Geometry
(Color c, std::string name) (defined in
IMP::display::Geometry
)
IMP::display::Geometry
get_color
() const (defined in
IMP::display::Geometry
)
IMP::display::Geometry
virtual
get_components
() const
IMP::display::Geometry
virtual
get_container
() const (defined in
IMP::display::SingletonsGeometry
)
IMP::display::SingletonsGeometry
get_has_color
() const (defined in
IMP::display::Geometry
)
IMP::display::Geometry
virtual
get_name
() const (defined in
IMP::base::Object
)
IMP::base::Object
get_version_info
() const =0
IMP::base::Object
pure virtual
NonCopyable
() (defined in
IMP::base::NonCopyable
)
IMP::base::NonCopyable
protected
Object
(std::string name)
IMP::base::Object
protected
ObjectsTemp
typedef
IMP::base::Object
related
set_check_level
(CheckLevel l)
IMP::base::Object
set_color
(Color c) (defined in
IMP::display::Geometry
)
IMP::display::Geometry
set_has_color
(bool tf) (defined in
IMP::display::Geometry
)
IMP::display::Geometry
set_log_level
(LogLevel l)
IMP::base::Object
set_name
(std::string name) (defined in
IMP::base::Object
)
IMP::base::Object
set_was_used
(bool tf) const
IMP::base::Object
show
(std::ostream &out=std::cout) const (defined in
IMP::base::Object
)
IMP::base::Object
SingletonsGeometry
(SingletonContainer *pc, Color c) (defined in
IMP::display::SingletonsGeometry
)
IMP::display::SingletonsGeometry
SingletonsGeometry
(SingletonContainer *pc) (defined in
IMP::display::SingletonsGeometry
)
IMP::display::SingletonsGeometry
~SingletonsGeometry
() (defined in
IMP::display::SingletonsGeometry
)
IMP::display::SingletonsGeometry
virtual