IMP.pmi.io.Subsequence Class Reference

A light class to store multiple not-necessarily-contiguous residue ranges. More...

Inherits object.

Detailed Description

A light class to store multiple not-necessarily-contiguous residue ranges.

Note

This class is only available in Python.

Definition at line 167 of file pmi/io/__init__.py.

Public Member Functions
def	__init__
	Create subsequence and optionally pass the first contiguous range. More...
def	add_range
	Add some stuff to this subsequence. More...
def	get_selection
	Create an IMP Selection from this subsequence. More...

Constructor & Destructor Documentation

def IMP.pmi.io.Subsequence.__init__	(		self,
			chain = None,
			molecule = None,
			residue_tuple = None,
			subsequences = None
	)

Create subsequence and optionally pass the first contiguous range.

Parameters

chain	The chain ID
molecule	The molecule name
residue_tuple	PDB-style inclusive residue range
subsequences	A list of other subsequences to combine (not implemented)

Definition at line 173 of file pmi/io/__init__.py.

Member Function Documentation

def IMP.pmi.io.Subsequence.add_range	(		self,
			chain = None,
			molecule = None,
			residue_tuple = None
	)

Add some stuff to this subsequence.

Parameters

chain	The chain ID
molecule	The molecule name
residue_tuple	PDB-style inclusive residue range

Definition at line 181 of file pmi/io/__init__.py.

def IMP.pmi.io.Subsequence.get_selection	(		self,
			hier,
			kwargs
	)

Create an IMP Selection from this subsequence.

Parameters

hier	An IMP hierarchy or list of them

ote any additional keyword arguments will be appended to the selection

Definition at line 192 of file pmi/io/__init__.py.

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The documentation for this class was generated from the following file:

• pmi/io/__init__.py