IMP
2.4.0
The Integrative Modeling Platform
|
Covariance function. More...
#include <IMP/isd/bivariate_functions.h>
Covariance function.
Definition at line 119 of file bivariate_functions.h.
Public Member Functions | |
Covariance1DFunction (kernel::Particle *tau, kernel::Particle *ilambda, double alpha=2.0, double jitter=0.0, double cutoff=1e-7) | |
void | add_to_derivatives (const Floats &x1, const Floats &x2, DerivativeAccumulator &accum) const |
update derivatives of particles More... | |
void | add_to_particle_derivative (unsigned particle_no, double value, DerivativeAccumulator &accum) const |
update derivatives of particles More... | |
IMP_Eigen::MatrixXd | get_derivative_matrix (unsigned particle_no, const FloatsList &xlist) const |
return derivative matrix More... | |
FloatsList | get_derivative_matrix (unsigned particle_no, const FloatsList &xlist, bool) const |
ContainersTemp | get_input_containers () const |
kernel::ParticlesTemp | get_input_particles () const |
particle manipulation More... | |
unsigned | get_ndims_x1 () const |
returns the number of input dimensions More... | |
unsigned | get_ndims_x2 () const |
unsigned | get_ndims_y () const |
returns the number of output dimensions More... | |
unsigned | get_number_of_optimized_particles () const |
returns the number of particles that are optimized More... | |
unsigned | get_number_of_particles () const |
returns the number of particles that this function uses More... | |
bool | get_particle_is_optimized (unsigned particle_no) const |
returns true if the particle whose index is provided is optimized More... | |
IMP_Eigen::MatrixXd | get_second_derivative_matrix (unsigned particle_a, unsigned particle_b, const FloatsList &xlist) const |
return second derivative matrix More... | |
FloatsList | get_second_derivative_matrix (unsigned particle_a, unsigned particle_b, const FloatsList &xlist, bool) const |
virtual std::string | get_type_name () const |
virtual ::IMP::base::VersionInfo | get_version_info () const |
Get information about the module and version of the object. More... | |
bool | has_changed () const |
return true if internal parameters have changed. More... | |
Floats | operator() (const Floats &x1, const Floats &x2) const |
evaluate the function at a certain point More... | |
IMP_Eigen::MatrixXd | operator() (const IMP::FloatsList &xlist) const |
evaluate the function at a list of points More... | |
FloatsList | operator() (const IMP::FloatsList &xlist, bool) const |
used for testing only More... | |
void | update () |
update internal parameters More... | |
Public Member Functions inherited from IMP::isd::BivariateFunction | |
BivariateFunction (std::string str) | |
Public Member Functions inherited from IMP::base::Object | |
virtual void | clear_caches () |
CheckLevel | get_check_level () const |
LogLevel | get_log_level () const |
void | set_check_level (CheckLevel l) |
void | set_log_level (LogLevel l) |
Set the logging level used in this object. More... | |
void | set_was_used (bool tf) const |
void | show (std::ostream &out=std::cout) const |
const std::string & | get_name () const |
void | set_name (std::string name) |
Additional Inherited Members | |
Protected Member Functions inherited from IMP::base::Object | |
Object (std::string name) | |
Construct an object with the given name. More... | |
virtual void | do_destroy () |
|
virtual |
update derivatives of particles
Implements IMP::isd::BivariateFunction.
Definition at line 199 of file bivariate_functions.h.
|
virtual |
update derivatives of particles
Implements IMP::isd::BivariateFunction.
Definition at line 216 of file bivariate_functions.h.
|
virtual |
return derivative matrix
Implements IMP::isd::BivariateFunction.
Definition at line 232 of file bivariate_functions.h.
|
virtual |
particle manipulation
Implements IMP::isd::BivariateFunction.
Definition at line 411 of file bivariate_functions.h.
|
virtual |
returns the number of input dimensions
Implements IMP::isd::BivariateFunction.
Definition at line 387 of file bivariate_functions.h.
|
virtual |
returns the number of output dimensions
Implements IMP::isd::BivariateFunction.
Definition at line 389 of file bivariate_functions.h.
|
virtual |
returns the number of particles that are optimized
Implements IMP::isd::BivariateFunction.
Definition at line 404 of file bivariate_functions.h.
|
virtual |
returns the number of particles that this function uses
Implements IMP::isd::BivariateFunction.
Definition at line 391 of file bivariate_functions.h.
|
virtual |
returns true if the particle whose index is provided is optimized
Implements IMP::isd::BivariateFunction.
Definition at line 393 of file bivariate_functions.h.
|
virtual |
return second derivative matrix
Implements IMP::isd::BivariateFunction.
Definition at line 330 of file bivariate_functions.h.
|
virtual |
Get information about the module and version of the object.
Reimplemented from IMP::base::Object.
Definition at line 426 of file bivariate_functions.h.
|
virtual |
return true if internal parameters have changed.
Implements IMP::isd::BivariateFunction.
Definition at line 138 of file bivariate_functions.h.
|
virtual |
evaluate the function at a certain point
Implements IMP::isd::BivariateFunction.
Definition at line 166 of file bivariate_functions.h.
|
virtual |
evaluate the function at a list of points
Implements IMP::isd::BivariateFunction.
Definition at line 173 of file bivariate_functions.h.
|
virtual |
used for testing only
Implements IMP::isd::BivariateFunction.
Definition at line 190 of file bivariate_functions.h.
|
virtual |
update internal parameters
Implements IMP::isd::BivariateFunction.
Definition at line 154 of file bivariate_functions.h.