Detailed Description

Class to read and write EM images in Spider format. They are stored in the header and data passed as arguments

Definition at line 31 of file SpiderImageReaderWriter.h.

Public Member Functions
	SpiderImageReaderWriter ()

	SpiderImageReaderWriter (const String &filename, bool skip_type_check, bool force_reversed, bool skip_extra_checkings)
	Full constructor. More...

virtual std::string	get_type_name () const

virtual ::IMP::base::VersionInfo	get_version_info () const
	Get information about the module and version of the object. More...

void	read (const String &filename, em::ImageHeader &header, cv::Mat &data) const

void	read_from_floats (const String &filename, em::ImageHeader &header, cv::Mat &data) const

void	read_from_ints (const String &, em::ImageHeader &, cv::Mat &) const

void	write (const String &filename, em::ImageHeader &header, const cv::Mat &data) const

void	write_to_floats (const String &filename, em::ImageHeader &header, const cv::Mat &data) const
	Writes an EM image in Spider format. More...

void	write_to_ints (const String &, em::ImageHeader &, const cv::Mat &) const

Public Member Functions inherited from IMP::base::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Additional Inherited Members
Protected Member Functions inherited from IMP::base::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Constructor & Destructor Documentation

IMP::em2d::SpiderImageReaderWriter::SpiderImageReaderWriter ( )

Empty constructor. It does not force reversed header and does not skip any of the tests

Definition at line 43 of file SpiderImageReaderWriter.h.

IMP::em2d::SpiderImageReaderWriter::SpiderImageReaderWriter	(	const String &	filename,
		bool	skip_type_check,
		bool	force_reversed,
		bool	skip_extra_checkings
	)

Full constructor.

Parameters

[in]	filename	file to read
[in]	skip_type_check	if true, the check for type of image is skipped
[in]	force_reversed	if true, the reverse mode is enforced for reading and writing
[in]	skip_extra_checkings	if true, the most stringent tests for consistency of images are skipped when reading

Definition at line 58 of file SpiderImageReaderWriter.h.

virtual ::IMP::base::VersionInfo IMP::em2d::SpiderImageReaderWriter::get_version_info ( ) const

virtual

Get information about the module and version of the object.

Definition at line 151 of file SpiderImageReaderWriter.h.

void IMP::em2d::SpiderImageReaderWriter::read_from_floats	(	const String &	filename,
		em::ImageHeader &	header,
		cv::Mat &	data
	)		const

virtual

Reads an image file in Spider format and stores the content int the header and data parameters

Parameters

[in]	filename	file to read
[in]	header	header to store the info
[in]	data	a matrix to store the grid of data of the image

The header format is already in Spider format, just read it

Definition at line 88 of file SpiderImageReaderWriter.h.

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void IMP::em2d::SpiderImageReaderWriter::write_to_floats	(	const String &	filename,
		em::ImageHeader &	header,
		const cv::Mat &	data
	)		const

virtual

Writes an EM image in Spider format.

Parameters

[in]	filename	file to write
[in]	header	header with the image info
[in]	data	a matrix with the grid of data of the image

The image header is already in Spider format, just write it

Definition at line 130 of file SpiderImageReaderWriter.h.

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The documentation for this class was generated from the following file: