Detailed Description

Performs the fine search for the registration values in order to register a model projection with an image

Definition at line 26 of file Fine2DRegistrationRestraint.h.

Public Member Functions
	Fine2DRegistrationRestraint (kernel::Model *m)

virtual IMP::kernel::ModelObjectsTemp	do_get_inputs () const

unsigned int	get_calls () const

RegistrationResult	get_final_registration () const

virtual std::string	get_type_name () const

virtual ::IMP::base::VersionInfo	get_version_info () const
	Get information about the module and version of the object. More...

void	set_subject_image (em2d::Image *subject)

void	setup (kernel::ParticlesTemp &ps, const ProjectingParameters &params, kernel::Model scoring_model, ScoreFunction score_function, MasksManagerPtr masks=MasksManagerPtr())

virtual double	unprotected_evaluate (IMP::kernel::DerivativeAccumulator *accum) const

Public Member Functions inherited from IMP::kernel::Restraint
	Restraint (kernel::Model *m, std::string name)

void	add_score_and_derivatives (ScoreAccumulator sa) const
	Perform the actual restraint scoring. More...

Restraint *	create_current_decomposition () const
	Decompose this restraint into constituent terms for the current conf. More...

Restraint *	create_decomposition () const
	Decompose this restraint into constituent terms. More...

virtual ScoringFunction *	create_scoring_function (double weight=1.0, double max=NO_MAX) const
	Create a scoring function with only this restraint. More...

virtual double	get_last_score () const

double	get_score () const

bool	get_was_good () const

void	set_weight (Float weight)

Float	get_weight () const

double	get_maximum_score () const

void	set_maximum_score (double s)

Public Member Functions inherited from IMP::kernel::ModelObject
	ModelObject (kernel::Model *m, std::string name)

bool	get_has_dependencies () const
	Return whether this object has dependencies computed. More...

bool	get_has_required_score_states () const
	Return whether score states are computed. More...

ModelObjectsTemp	get_inputs () const

ModelObjectsTemps	get_interactions () const
	Get the interacting sets induced by this ModelObject. More...

Model *	get_model () const

ModelObjectsTemp	get_outputs () const

const ScoreStatesTemp &	get_required_score_states () const
	Get the score states that are ancestors of this in the dependency graph. More...

void	set_has_dependencies (bool tf)
	Either invalidate the dependencies or ensure they are correct. More...

void	set_has_required_score_states (bool tf)
	Compute the required score states. More...

Public Member Functions inherited from IMP::base::Object
virtual void	clear_caches ()

CheckLevel	get_check_level () const

LogLevel	get_log_level () const

void	set_check_level (CheckLevel l)

void	set_log_level (LogLevel l)
	Set the logging level used in this object. More...

void	set_was_used (bool tf) const

void	show (std::ostream &out=std::cout) const

const std::string &	get_name () const

void	set_name (std::string name)

Additional Inherited Members
Protected Member Functions inherited from IMP::kernel::Restraint
virtual void	do_add_score_and_derivatives (ScoreAccumulator sa) const

virtual Restraints	do_create_current_decomposition () const

virtual Restraints	do_create_decomposition () const

ModelObjectsTemp	do_get_outputs () const

Protected Member Functions inherited from IMP::kernel::ModelObject
virtual ModelObjectsTemps	do_get_interactions () const

virtual void	handle_set_has_required_score_states (bool)

Protected Member Functions inherited from IMP::base::Object
	Object (std::string name)
	Construct an object with the given name. More...

virtual void	do_destroy ()

Constructor & Destructor Documentation

IMP::em2d::Fine2DRegistrationRestraint::Fine2DRegistrationRestraint ( kernel::Model * m )

Constructs the restraint. Use the setup() function after construction

Member Function Documentation

virtual IMP::kernel::ModelObjectsTemp IMP::em2d::Fine2DRegistrationRestraint::do_get_inputs ( ) const

virtual

Get any Particle, Container or other ModelObjects read by this during evaluation. If you read everything in a container, you can just return that container.

Implements IMP::kernel::ModelObject.

unsigned int IMP::em2d::Fine2DRegistrationRestraint::get_calls ( ) const

Get the number of times that the function was called

Returns: The number of calls

Definition at line 70 of file Fine2DRegistrationRestraint.h.

RegistrationResult IMP::em2d::Fine2DRegistrationRestraint::get_final_registration ( ) const

Get the final values for the parameters after the optimization performed by this restraint

Returns: The registration result

virtual ::IMP::base::VersionInfo IMP::em2d::Fine2DRegistrationRestraint::get_version_info ( ) const

virtual

Get information about the module and version of the object.

Reimplemented from IMP::base::Object.

Definition at line 64 of file Fine2DRegistrationRestraint.h.

void IMP::em2d::Fine2DRegistrationRestraint::set_subject_image ( em2d::Image * subject )

Sets the image to use by the restraint to perform the fine search of the projection registration parameters

Parameters

subject The subject image

void IMP::em2d::Fine2DRegistrationRestraint::setup	(	kernel::ParticlesTemp &	ps,
		const ProjectingParameters &	params,
		kernel::Model *	scoring_model,
		ScoreFunction *	score_function,
		MasksManagerPtr	masks = `MasksManagerPtr()`
	)

Initialization function. To be called after setting the model for the restraint

Parameters

ps	The particles used for the registration
params	The parameters used to project the images
scoring_model	The model that is projected.
score_function	The function that is used to score the similarity between a projection of the model and the EM image
masks	A manager containing the masks used for projecting.

The documentation for this class was generated from the following file:

Fine2DRegistrationRestraint.h

Detailed Description

Public Member Functions

Additional Inherited Members

Constructor & Destructor Documentation

Member Function Documentation