IMP
2.4.0
The Integrative Modeling Platform
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#include <IMP/algebra/vector_search.h>
Build a structure for finding nearest neighbors. Different implementations are used depending on what optional dependencies are available. The class NearestNeighborD uses CGAL in order to improve its functionality. It will fall back on less good code without it. The class NearestNeighborD uses ANN in order to improve its functionality. It will fall back on less good code without it.
Definition at line 54 of file vector_search.h.
Public Member Functions | |
template<class It > | |
NearestNeighborD (It b, It e, double epsilon=0) | |
NearestNeighborD (const base::Vector< VectorD< D > > &vs, double epsilon=0) | |
Ints | get_in_ball (unsigned int i, double distance) const |
Ints | get_in_ball (const VectorD< D > &pt, double distance) const |
unsigned int | get_nearest_neighbor (const VectorD< D > &q) const |
unsigned int | get_nearest_neighbor (unsigned int i) const |
Ints | get_nearest_neighbors (unsigned int i, unsigned int k) const |
Search using the ith point in the input set. More... | |
Ints | get_nearest_neighbors (const algebra::VectorD< D > &v, unsigned int k) const |
virtual std::string | get_type_name () const |
virtual ::IMP::base::VersionInfo | get_version_info () const |
Get information about the module and version of the object. More... | |
void | set_query_log (std::string fname) |
Log the points and queries to a file for performance studies. More... | |
Public Member Functions inherited from IMP::base::Object | |
virtual void | clear_caches () |
CheckLevel | get_check_level () const |
LogLevel | get_log_level () const |
void | set_check_level (CheckLevel l) |
void | set_log_level (LogLevel l) |
Set the logging level used in this object. More... | |
void | set_was_used (bool tf) const |
void | show (std::ostream &out=std::cout) const |
const std::string & | get_name () const |
void | set_name (std::string name) |
Additional Inherited Members | |
Protected Member Functions inherited from IMP::base::Object | |
Object (std::string name) | |
Construct an object with the given name. More... | |
virtual void | do_destroy () |
Ints IMP::algebra::NearestNeighborD< D >::get_in_ball | ( | unsigned int | i, |
double | distance | ||
) | const |
Find all points within the provided distance.
Definition at line 149 of file vector_search.h.
Ints IMP::algebra::NearestNeighborD< D >::get_in_ball | ( | const VectorD< D > & | pt, |
double | distance | ||
) | const |
Find all points within the provided distance.
Definition at line 157 of file vector_search.h.
unsigned int IMP::algebra::NearestNeighborD< D >::get_nearest_neighbor | ( | unsigned int | i | ) | const |
Search using the ith point in the input set.
Definition at line 109 of file vector_search.h.
Ints IMP::algebra::NearestNeighborD< D >::get_nearest_neighbors | ( | unsigned int | i, |
unsigned int | k | ||
) | const |
Search using the ith point in the input set.
Definition at line 123 of file vector_search.h.
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virtual |
Get information about the module and version of the object.
Reimplemented from IMP::base::Object.
Definition at line 164 of file vector_search.h.
void IMP::algebra::NearestNeighborD< D >::set_query_log | ( | std::string | fname | ) |
Log the points and queries to a file for performance studies.
Definition at line 83 of file vector_search.h.