spelling_exceptions=['cn', 'symm', 'proteomics', 'pdb', 'pca', 'rmsd',
                     'patchdock', 'ev', 'params', 'xlink', 'cmm', 'connolly']
function_name_exceptions=[
                    'Ensemble.score_by_restraints',
                    'Ensemble.unload_combination',
                    'ProteomicsEMAlignmentAtomic.align',
                    'convert_em_to_multifit_format',
                    'convert_multifit_format_to_transformations',
                    'convert_multifit_to_em_format',
                    'convert_transformations_to_multifit_format',
                    'fft_based_rigid_fitting',
                    'molecule2anchors',
                    'pca_based_rigid_fitting']
