show_exceptions=['ElementTable']
value_object_exceptions=['ElementTable', 'LennardJonesTypedPairScore']
function_name_exceptions=['transform',
                          'BrownianDynamics.simulate',
                          'BrownianDynamics.simulate_wave',
                          'BrownianDynamicsTAMD.simulate',
                          'BrownianDynamicsTAMD.simulate_wave',
                          'MolecularDynamics.assign_velocities',
                          'VelocityScalingOptimizerState.rescale_velocities',
                          'Simulator.simulate',
                          'Simulator.simulate_wave',
                          'MolecularDynamics.simulate',
                          'MolecularDynamics.simulate_wave',
                          'BerendsenThermostatOptimizerState.rescale_velocities',
                          'LangevinThermostatOptimizerState.rescale_velocities',
                          'Selection.difference',
                          'Selection.difference_update',
                          'Selection.intersection',
                          'Selection.intersection_update',
                          'Selection.symmetric_difference',
                          'Selection.symmetric_difference_update',
                          'Selection.union',
                          'Selection.union_update',
                          'get_all_atom_CHARMM_parameters',
                          'get_heavy_atom_CHARMM_parameters', "get_kd",
                          'get_drmsd_Q', 'hash_value',
                          ]
spelling_exceptions=['lennard', 'charmm', "jones",
                     "impropers", "ez",
                     "rmsd", "pdb", "multimodel", "conect",
                     'rescale',
                     'berendsen', 'langevin', 'runge', 'kutta', "drms", "drmsd",
                     "psipred", "femto", "xor", "mmcif", "uniprot", "asym",
                     "bcif"]
