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IMP Reference Guide  develop.63e71f5352,2022/07/06
The Integrative Modeling Platform
IMP.pmi1.restraints.crosslinking Namespace Reference

Restraints for handling crosslinking data. More...

Detailed Description

Restraints for handling crosslinking data.


class  AtomicCrossLinkMSRestraint
 Setup cross-link distance restraints at atomic level The "atomic" aspect is that it models the particle uncertainty with a Gaussian The noise in the data and the structural uncertainty of cross-linked amino-acids is inferred using Bayes' theory of probability. More...
class  ConnectivityCrossLinkMS
 This restraint allows ambiguous crosslinking between multiple copies it is a variant of the SimplifiedCrossLinkMS. More...
class  CrossLinkingMassSpectrometryRestraint
 Setup cross-link distance restraints from mass spectrometry data. More...