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IMP Reference Guide  develop.1a04b19ae7,2021/11/27
The Integrative Modeling Platform
IMP::em2d::Fine2DRegistrationRestraint Class Reference

#include <IMP/em2d/Fine2DRegistrationRestraint.h>

+ Inheritance diagram for IMP::em2d::Fine2DRegistrationRestraint:

Detailed Description

Performs the fine search for the registration values in order to register a model projection with an image

Definition at line 26 of file Fine2DRegistrationRestraint.h.

Public Member Functions

 Fine2DRegistrationRestraint (Model *m)
virtual IMP::ModelObjectsTemp do_get_inputs () const
unsigned int get_calls () const
RegistrationResult get_final_registration () const
virtual std::string get_type_name () const
virtual ::IMP::VersionInfo get_version_info () const
 Get information about the module and version of the object. More...
void set_subject_image (em2d::Image *subject)
void setup (ParticlesTemp &ps, const ProjectingParameters &params, Model *scoring_model, ScoreFunction *score_function, MasksManagerPtr masks=MasksManagerPtr())
virtual double unprotected_evaluate (IMP::DerivativeAccumulator *accum) const
- Public Member Functions inherited from IMP::Restraint
 Restraint (Model *m, std::string name)
void add_score_and_derivatives (ScoreAccumulator sa) const
 Perform the actual restraint scoring. More...
void add_score_and_derivatives_moved (ScoreAccumulator sa, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const
Restraintcreate_current_decomposition () const
 Decompose this restraint into constituent terms for the current conf. More...
Restraintcreate_decomposition () const
 Decompose this restraint into constituent terms. More...
virtual ScoringFunctioncreate_scoring_function (double weight=1.0, double max=NO_MAX) const
 Create a scoring function with only this restraint. More...
virtual RestraintInfoget_dynamic_info () const
virtual double get_last_last_score () const
 Get the unweighted score from the last-but-one time it was evaluated. More...
virtual double get_last_score () const
double get_score () const
virtual RestraintInfoget_static_info () const
bool get_was_good () const
void set_weight (Float weight)
Float get_weight () const
double get_maximum_score () const
void set_maximum_score (double s)
- Public Member Functions inherited from IMP::ModelObject
 ModelObject (Model *m, std::string name)
bool get_has_dependencies () const
 Return whether this object has dependencies computed. More...
bool get_has_required_score_states () const
 Return whether score states are computed. More...
ModelObjectsTemp get_inputs () const
ModelObjectsTemps get_interactions () const
 Get the interacting sets induced by this ModelObject. More...
Modelget_model () const
ModelObjectsTemp get_outputs () const
const ScoreStatesTempget_required_score_states () const
 Get the score states that are ancestors of this in the dependency graph. More...
void set_has_dependencies (bool tf)
 Either invalidate the dependencies or ensure they are correct. More...
void set_has_required_score_states (bool tf)
 Compute the required score states. More...
- Public Member Functions inherited from IMP::Object
virtual void clear_caches ()
CheckLevel get_check_level () const
LogLevel get_log_level () const
void set_check_level (CheckLevel l)
void set_log_level (LogLevel l)
 Set the logging level used in this object. More...
void set_was_used (bool tf) const
void show (std::ostream &out=std::cout) const
const std::string & get_name () const
void set_name (std::string name)

Additional Inherited Members

- Protected Member Functions inherited from IMP::Restraint
virtual void do_add_score_and_derivatives (ScoreAccumulator sa) const
virtual void do_add_score_and_derivatives_moved (ScoreAccumulator sa, const ParticleIndexes &moved_pis, const ParticleIndexes &reset_pis) const
virtual Restraints do_create_current_decomposition () const
virtual Restraints do_create_decomposition () const
ModelObjectsTemp do_get_outputs () const
- Protected Member Functions inherited from IMP::ModelObject
virtual ModelObjectsTemps do_get_interactions () const
virtual void handle_set_has_required_score_states (bool)
- Protected Member Functions inherited from IMP::Object
 Object (std::string name)
 Construct an object with the given name. More...
virtual void do_destroy ()

Constructor & Destructor Documentation

IMP::em2d::Fine2DRegistrationRestraint::Fine2DRegistrationRestraint ( Model m)

Constructs the restraint. Use the setup() function after construction

Member Function Documentation

virtual IMP::ModelObjectsTemp IMP::em2d::Fine2DRegistrationRestraint::do_get_inputs ( ) const

Get any Particle, Container or other ModelObjects read by this during evaluation. If you read everything in a container, you can just return that container.

Implements IMP::ModelObject.

unsigned int IMP::em2d::Fine2DRegistrationRestraint::get_calls ( ) const

Get the number of times that the function was called

The number of calls

Definition at line 70 of file Fine2DRegistrationRestraint.h.

RegistrationResult IMP::em2d::Fine2DRegistrationRestraint::get_final_registration ( ) const

Get the final values for the parameters after the optimization performed by this restraint

The registration result
virtual ::IMP::VersionInfo IMP::em2d::Fine2DRegistrationRestraint::get_version_info ( ) const

Get information about the module and version of the object.

Reimplemented from IMP::Object.

Definition at line 64 of file Fine2DRegistrationRestraint.h.

void IMP::em2d::Fine2DRegistrationRestraint::set_subject_image ( em2d::Image subject)

Sets the image to use by the restraint to perform the fine search of the projection registration parameters

subjectThe subject image
void IMP::em2d::Fine2DRegistrationRestraint::setup ( ParticlesTemp ps,
const ProjectingParameters params,
Model scoring_model,
ScoreFunction score_function,
MasksManagerPtr  masks = MasksManagerPtr() 

Initialization function. To be called after setting the model for the restraint

psThe particles used for the registration
paramsThe parameters used to project the images
scoring_modelThe model that is projected.
score_functionThe function that is used to score the similarity between a projection of the model and the EM image
masksA manager containing the masks used for projecting.

The documentation for this class was generated from the following file: