[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

Re: [IMP-dev] problem running jobs on the cluster



On Sep 21, 2011, at 6:18 AM, Keren Lasker wrote:

> thanks.
> so how do you think others are running things on the cluster these days? :)
> is everyone using your production version or installed things locally? 
I know of various combinations of using mine, using others, Charles was going to ask Josh to update some build machines or not using it at all. I like my production setup since you know there are no other libraries that are non-standard that are required. And I intent to keep things stable (most of the libraries there have version numbers in their paths).

> also, you can answer to that offline if more appropriate, but how do one link your hdf5 version with imp? is there a flag in the config file or something like that?
As with all dependencies, just make sure the includepath, libpath, and perhaps, ldlibpath includes the library.

> On Sep 21, 2011, at 4:16 PM, Daniel Russel wrote:
> 
>> I don't think hdf5 or at least appropriate versions of hdf5 is installed on the cluster as a whole. I suggest building against the version in ~drussel/production/hdf5 (you can copy that to your home dir if you want).
>> 
>> On Sep 21, 2011, at 3:41 AM, Keren Lasker wrote:
>> 
>>> hi:
>>> running jobs on our shared cluster i am getting an error:
>>> "ImportError: libhdf5.so.6: cannot open shared object file: No such file or directory"
>>> things are running ok on baton2, the problem occurs on the nodes of the cluster.
>>> any idea how to resolve that?
>>> 
>>> thanks, keren.
>>> _______________________________________________
>>> IMP-dev mailing list
>>> 
>>> https://salilab.org/mailman/listinfo/imp-dev
>> 
>> 
>> _______________________________________________
>> IMP-dev mailing list
>> 
>> https://salilab.org/mailman/listinfo/imp-dev
> 
> 
> _______________________________________________
> IMP-dev mailing list
> 
> https://salilab.org/mailman/listinfo/imp-dev